RNA id: XM_039819108.1


Basic Information

Item Value
RNA id XM_039819108.1
length 2708
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC120570636
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19214753 ~ 19221945 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATTTAGAATTaaatgacaaagaaagaaacaaagtaaGAATGTACCTGTTCAAAGCAATTAAAGATCCCCTCCAGACAGGTTCTAAGACAGGTCAAAACACTTtgcttaaaataataatttgttgaATATCTTAGATAAATACTAGATTAAAAATACTTCTACattatttaaagcatttttatttgttctcCCTCTTTGAAATGTCCAGAATCTAACATACGAATATTTAGTGTTTCAAAAGTTGAACTGCTAAGACACAAGACACAATGCCTCCTGCTTCACTGAAAAGAGGTTTCAAGTTGCAACATCACACCAAAGTCACAAAAtcatcaaaatcaaactcaGATTTTAAGGTGAGCAAAGAGAAACCTTCCCCCTTCTACTGATGAACGTGAAAACAGCCGTCTGGTGTCAAGCTCTGCACAAACATCATCCACAGGGAAGGTCAAACATCTAAGTAATGTAACAATacgcaaaacacatttttgacttTAAATGTCTGGAAATAAAACCGTGACATCTCTGCAGTGGCAGCAACATCATTGCTGAGGCACATTCAAAAAACAAGTTTAAAACTGCTTTTATCtaacaatttcaatttaaccTTACTTCATGAAAATCAAGCCAAGGACATAAAGTTGAAGAATCACCTAAAAGGGGTTTAAAAAGTGCTGCTGTGTTATCCTAAATCAGACACAATAAGAAGAAATATAAACAGATGATATACTTTATCTTTAAATGTAGGAATTCATTATGACCGATGGTACATAATGCCTTTAGATTGGAGCAGAACTTTATCCATGCAGATTGATTAATTTCCCTTCACTTTACTCATCCTCAACCAACTCCACACTGGCCATCTCCTGCTGGAGAGGATGGGTGTGGCTGTACAGTGTCAAATTACACTCAAATTACAGACCTGCCTAACAGGGCCCACTCTCACTCCCTCTGCACCTTCATTGGTTGAGAACCAACCGCTTTATTTAACCAGCCTGTTTCCTGTAGGCAACTTCTTTGTCAAAGAGGAAATGACATTGCAGCaccaaaacactgaaaacagATGAGTACCAAACCTCTTTTTGACTTCGAGCAACACACAGCTCAGCCTCTGTTACAGAAAACCCATGAGGCAAAACAATCTCGCCATAAAACAGCTTTTGGAACAGAGCGGTGAAGTATGTCTGCTGGAGACAAAGAGACTCCGCGAGACACCACAGGTCAAAGTGgatctgctgtttttttctcgAACCCTCTGATGAGTGATTTGGAATCTGACTGGTCCCCGATTCACGATgctgcctttaatggacaggtcCTTGCTCTGCAGAGACTCATTGCTCAGGGTACATGTGTAAATCTGAACACTCTGAACCAGGTCTCTCCTCTCCATGGAGCATGTTTACAAGGCCACGTGGCTTGCGCCAAGCTTCTGGTGGAAAATGGGGCAAAAGTAAACAGTTCGACGGTGGATGGACAAACGCCCCTGTCAGAAGCTTGCGCCCGGGGCCATGTGACCTGTGTATCGCTGCTCCTTCAACAAGGAGCGACTCCCCTGGGAACCAGCCACACCAGCTCTCCAATTCACAGGGCAGCAGCCAAAGGTCATACAGAGTGCATCGAGTCTCTTGTCCAGCACGGTGCAGATGTGGATCAGTATATTGACCAATCAGGTTTCCCTCTTCACGTCGCCTGCTCCAATCTGCATCTGAGTTCTGTGTGTAAACTGCTTCAACTTGGTGCCAGTGTGAACAGCAGTGTGTCTGGTGACTCGCCGCTGCACATCGCTGCCCGTCTGTCCAGTCCTGAGATGGTGTCAGTCCTGCTTGAGCACGGGGCCGATCGCTCACTCAGGAATTCAGAGGGCAAACAGCCACTGATGCTCGCACCTCCCAACAGCCCGGTGGAGAGGCTGTTGAGACAAGCAGGAGGAGTGTCTCCTCTAATGCAGCTGTGCCGGCTGTACGTCAGGAAAACTCTGAGCAAGCAGAGACTGGGTGAGATCCCCAACCTTCACCTTCCCAAAGAAGTGAAACAGTATCTTCTCTATCAATCAGACCCAGGGGGAGATCTGATGCACAAAATAATGTTCAATTCTGAGCCCTAAACTTCTAGGTCTGTAGGGGGTGCCGTTGCATAATCTTGCAGTCAGAAGACTACATCATAGCTCATGGTCATGGTAGTGATTAACTATATTTCTGCTTTCTGTGACAGACCTCTGTAAACAAACTTTCAGAATTCTCAAGATCAATCTGGACTTTCATGTGAAGACTTTTTATCATTAAGTATtcataaacataaaataaatacacatttaaaatgagaATATGGGCTCATAAGGTCTAATAATTGTTGCATAACTAATGTTAAATAAGGTTTAACAAGCTGAAACAATATTCTTTAGATTACACAAGCCTCCACATTCGGCTAATATTGTAGTTTTTgttatttgaaactaaagtttctgtttttgatgctgctgtattgatttttcctTTAGACTTATAGTAGATTGAATTTACTCTCACGTGAAATCTTGTTCATGTCTGGTACATGCTGTCCCTATAGGGTTTAGTGGTTTTAGTCCTTGCAGGGTAcatggcaacatttttccaacagcaaacatttaaaaaacgaaAGCTAAACACATCAATAGAGATTggattacacaaatatattttttgtactgcaataaataataaaaacaaa

Function

GO: NA

KEGG:

id description
K10331 ASB9; ankyrin repeat and SOCS box protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168446 lncRNA downstream 8812 19201746 ~ 19205941 (-) True G125227
XR_005640882.1 lncRNA downstream 100972 19108684 ~ 19113781 (-) False LOC120569517
TU168387 lncRNA downstream 102969 19108300 ~ 19111784 (-) True LOC120569517
TU168374 lncRNA downstream 123974 19089502 ~ 19090779 (-) True G125178
TU168365 lncRNA downstream 137987 19073235 ~ 19076766 (-) True G125173
TU168460 lncRNA upstream 10047 19231992 ~ 19233621 (-) False tbl1x
TU168536 lncRNA upstream 210119 19432064 ~ 19432431 (-) True G125293
TU168537 lncRNA upstream 213697 19435642 ~ 19436047 (-) True G125294
TU168538 lncRNA upstream 217481 19439426 ~ 19439851 (-) True G125295
TU168547 lncRNA upstream 232472 19454417 ~ 19459245 (-) True G125299
XM_039819101.1 mRNA downstream 18908 19189183 ~ 19195845 (-) True fancb
XM_039817373.1 mRNA downstream 56688 19128224 ~ 19158065 (-) True gpm6bb
XM_039817372.1 mRNA downstream 71917 19128224 ~ 19142836 (-) False gpm6bb
XM_039817374.1 mRNA downstream 71921 19130925 ~ 19142832 (-) False gpm6bb
XM_039817378.1 mRNA downstream 96166 19116575 ~ 19118587 (-) True trappc2
XM_039819103.1 mRNA upstream 10042 19231987 ~ 19258846 (-) False tbl1x
XM_039819104.1 mRNA upstream 10042 19231987 ~ 19258846 (-) False tbl1x
XM_039819106.1 mRNA upstream 10042 19231987 ~ 19250234 (-) False tbl1x
XM_039819105.1 mRNA upstream 10042 19231987 ~ 19250234 (-) True tbl1x
XM_039819030.1 mRNA upstream 116996 19338941 ~ 19349059 (-) False LOC120570610
TU168242 other downstream 510076 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 510076 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 510201 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 514951 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 373984 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 531098 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 568586 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 699409 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1237217 20459162 ~ 20461629 (-) True G125619

Expression Profile