RNA id: XM_039819150.1


Basic Information

Item Value
RNA id XM_039819150.1
length 3256
RNA type mRNA
GC content 0.49
exon number 13
gene id map2
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 13513114 ~ 13620499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGTGACTAGTACAGTCATTACGGTAAATGAAGGCTGCAGAGCCTCTGTGTCCGACAGACCCGGAGTTGCACCGACAGACACTGCGCCGAACAGGTCTCGGATGTTAGCTTTTATTCTGAGCCGTGGACAACATCCCATCTAGCCAGGTGTGACTAGGAGGCTGTCCCCCTTGGATTTCGTTATTCTTCTGACAATCTTGACGACAAACCCGTGAGAtttggagagaggacagatttTTTGCATCCCGCTTCACTCATTATCCAGTCCCAGATCACCTAACCAGCCAGAAGGAGAGACCCCACACCTTGCCCACCCTTCCCTGCTGCTAGCTAGCACCAGCATGGCAGACAGTCGACAGCCAGAAGATGGTGCCCCTCAGTGGGACCCATCAGGGGGTCAGGAGCCCACTGGCACCCATGGAGCCAATGGCTACTCTTCCTCCGCCTACAGGACCTGCCAGCCTGGTGGGCCCCCCCACATGGCCACAGGCTCCTACTCTGCCAGGGAAAATGGCTTCAATGGGGATCTTACTGGTGCCCCCGCTATAACTGCAGAACAAGTGTCAGCGCGGATTGTGCAGGAAGTGACGGCAGAGGCAGTGGCGGTGCTGAAGGGAGAGCAGGAGACTCAAAGGCTGCCATCAGTTGAAGACACTGCAAATTTGCcaccctctcctcccccctcaCCTGCTGCGGAGCACTTTGGTCCTCTGGAACAAGaggCGCTACCAGACAGTCGTCAGCCTCTCAGTGTTGCCAAACAGTCTCGCGACAGAGCATCGGATGGTGGGTCATGGAGCCCTGAAAAGGGGTCCTCTGTGCCGCGGCATGCCTCCATTCTGAGTCGCCGTGCATACCATGACCAAGAGGAGAGCTCCACCTCCATCACCAGCTCTGGCTCCACGGCTCCTCGCAGAGCCACATCGTTTCGCACAGAGATGAGGGCAGAGCATAGGACAGGACGAGCCCCTAGCATGACAGAATCAGTGCGCTCCCGTTCGGCTCGCAGTGGCCACTCCACCCCTCGCACCTCTGGCTCCACAGCCATCACCCCAGGAACCCCTCCCAGCTACTCAGCGTCCTCAAGGACCCCTGGGACCCCACGCTCCCTCAGCTTGATTTCCCAGGAAAGGAAGGTGGCAGTGGTCCGCACCCCACCCAAGTCACCTGCAACCACGCCCAAGCAGCTCCGCATCATCAACCAGCCACTACCTGACTTCAAGAACGTCAGGTCCAAGATTGGCTCCACAGAGAATATCAAGTACCAGCCCAAAGGAGGACAGGTGATGATACAGAACAAGAAGATTGACTTGAGCCACGTGACCTCCAAGTGTGGATCTCTAGACAACATCCATCATCGGCCAGGGGGCGGTAACGTGCGTATAGAGACTGTGAAGTTGGACTTCAAAGACAAAGCCCAAGCCAAGGTGGGTTCCCTGGAAAATGCTCAGCACACTCCTGGTGGAAGCTGTGTCACGATTGAGACCCACAGGCTGATGTTTCGCGACCAAGCCAAGGCACGGGTGGACCACGGGGCTGAGATTGTTGTCCAGTCGCCGGGCCTGTCCAGCTCCGTGTCCCCCCAGCGCCACCGGGGCAGCCACTTATCATCCTCCGGCAGTCTCAACGTACTGGAGTCGCCGCAGTTAGCAACCCTGGCTGAGGATGTGACTGCAGCTCTGGCCAAGCAGGGTTTGTGAACACTGGATCTCTGGATTCCTGCTTTGCACCCCGGACATCCTCACCCCGATCCCCTCAAACTTTTCTGCCCACACCTGCCACACCGAGGCCACCGTCAGCTAAACCACAGCCTCTTAACATCTCCACTTCAACATCCATCACTCAACTCTAAGTAGAGACTCGAATTAGGAGCTACTGTACTTTGATCTTCTTTATTTTCCAAATATATGCTATTTCTGACTCATTTTCTTTTTGGCCTCTCTCTTTTTGAATGATGTTGCATAGAATAGTTCAGTCTGAGCACTGGTCATAAATTAAGTGGTATATACAAAGTGGGGGACCAGGTGTTGGATTAACTGGTCCTGGATCAGTGTTTTGAAGAAGCTGCAGccttttttctacattaaatAAGAAGTAATGTGGCCAGCACACCATGCAGCACGTGTTATTTCGCTCAGTAAACATGCGTGCATGGATGCCAAACCCCCTAACAAACCAAGTATCCTTACTGCAAGTCATTCTTGTCATccgatatataatatatttaacaaATATATATAGAAACATGTATAAAACCTTCTTTGCCATCTACATGtcctaaaaaacattttaaaaggaaGTGACAATATGGCTATAAAATATACCTGTAAAATTGCATTACTGCAAAAACTAGGTCATGTTATGACAAGCATGTATTGATTCTAATATTAAAAGAGGCTATTTTGTAATCTAAAAGGATTTTAGTAAGTTATTTCCTCAATTATTGGATAAAGATTAAACAAGTTCATGTTTTGTAGTTATTagttgtttacagtgtattgctTGGTGACAATGTCAGACAGCTGATTTGGTGTTGCTAAGGAAGACATCTCAGTCCTGTTGAAGAGCATCATACACGTTGTACCTGCTCAGTAGTTCAATATAGACGCCTGTTTATACATCAGAACACTAATCAACACCGGAGCTCATTCCACAAACCTACAGCGAAAGGCAGATATTGAGCTCACAGACGTTCCTCCGCTAGCACAGGCTGATGTTGGACTCATCAGGACTGTCTGTTGACGCTACGAATGCAACCTGAGATTTAGCAGAAGATGCCGCTACTCTgaaatctgtctgtgtgtgtgcgtttggtGCAGATCCCATGCCGTTTTACGACGTATGCTAACGTATCTGGATGTTTTGTTGCAATATGTGGGAGaagaaagttggaaaaaaaatattttgaaaaatccattaaaaaagacaaatcatgaagaaaaataaaaaggcagagggAACTCTGAACCTGTTAAATCTGTTAGAAAAAAGTGTTTGGGTGGTCTAGTTTCTTTTTCAGCCACCATTTGTGGTATATCCTGCCTCCTGCCTAATTACTGCCCTCACCTGCGATTGTTTGTTTGCTTCTGTGTTTTTTCTGCATACCCCATCTGCGTGTGCCCCCTTCCCACCTCCTGCTCCACCCTACAGCAactgtaaatgtatttaaaaggtCAAGTAGATGTACGCAGTTTTTCTCTTGTTGATATGACACCAATTACAATAATTAATGCgaataaaaaggacaaaaagtgA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166271 lncRNA upstream 135976 13372348 ~ 13377140 (+) True G123634
TU166126 lncRNA upstream 651293 12861554 ~ 12861823 (+) True G123505
TU166112 lncRNA upstream 835704 12677109 ~ 12677412 (+) True G123494
TU166111 lncRNA upstream 836990 12675926 ~ 12676126 (+) True G123493
TU166109 lncRNA upstream 848645 12664001 ~ 12664471 (+) True G123491
TU166366 lncRNA downstream 93711 13714210 ~ 13715962 (+) True G123714
TU166373 lncRNA downstream 149180 13769679 ~ 13769942 (+) True G123721
TU166380 lncRNA downstream 273781 13894280 ~ 13896128 (+) True G123725
TU166386 lncRNA downstream 541183 14161682 ~ 14162642 (+) True G123731
TU166417 lncRNA downstream 763620 14384119 ~ 14384351 (+) True G123759
XM_039818291.1 mRNA upstream 3324 13486917 ~ 13509792 (+) True kansl1l
XM_039818290.1 mRNA upstream 29544 13482838 ~ 13483572 (+) True LOC120570063
XM_039818152.1 mRNA upstream 31617 13466750 ~ 13481499 (+) True heg1
XM_039818153.1 mRNA upstream 31617 13466750 ~ 13481499 (+) False heg1
XM_039819017.1 mRNA upstream 54530 13440120 ~ 13458586 (+) False slc12a8
XM_039818292.1 mRNA downstream 15055 13635554 ~ 13696334 (+) True cps1
XM_039817647.1 mRNA downstream 840391 14460890 ~ 14488147 (+) True vwc2l
XM_039817646.1 mRNA downstream 840391 14460890 ~ 14488147 (+) False vwc2l
XM_039817648.1 mRNA downstream 840397 14460896 ~ 14488147 (+) False vwc2l
XM_039818900.1 mRNA downstream 993858 14614357 ~ 14616247 (+) True LOC120570509
TU166270 other upstream 159031 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 233250 13049758 ~ 13279866 (+) True G123539
TU165581 other upstream 2894420 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 3584225 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 3588276 9920711 ~ 9924840 (+) False umps
TU166312 other downstream 15087 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 612833 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 1517978 15138477 ~ 15155886 (+) False trpm2
TU167128 other downstream 2478772 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 3377282 16997781 ~ 16999532 (+) False col28a2a

Expression Profile