RNA id: XM_039819166.1


Basic Information

Item Value
RNA id XM_039819166.1
length 2262
RNA type mRNA
GC content 0.43
exon number 3
gene id ramp1
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 8701569 ~ 8771922 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTCGAGCAGTTTGCGCAAGGTGAGACAGCAGAGGATCCTTGACCGGATGGCCGTATAAGCTCCATGGAGTCCTTCACCTAGCTGCTGTCACTTATTGTGTTACCATCTACTCTTTGAGCTCTTGTCAGTTgctccccacccccacccccacccccctcccccgctTCACTTCCCTTCCAAACTTCAGCCAGTGGATCATTCGGAGAGCGACAGGATGGGATCGCAGACCGGGGCAGCTCTGCAGAAACAGACGCTCCTGTGGTTCGTCGTAGCAGTGTCCCAGTGTGTGTCGGCACTAGGGTGTGAGCCGGACTATGAATTAGCCATTGAGGAGGTCTGCCTGGACACATTCAGACTGGACATGCAAAAGCTGGACCAGAGACACTGGTGTAGCTGGGAGGACACAGTCGAACTCTACGGCGAGCTGACAAACTGCACGTTCCTGTGGGCGCTAAGGATGAATTGCTTCTGGCCCAACAGGCTGGTGGATGAGTTCTTCATCCGAGTCCACAAGCAGTACTTCCACGACTGCTCATTGTCTGGACGGCTTCTCAAGGACCCACCAAATCGCATCCTGGGTCCATTTATTGCAATACCAGTCCTGGTCACCCTCCTTATGACGGCCCTGGTGGTGTGGAGGAGCAAACGCAGCGAGGGGATTGTGTAGTGAGGGGAAGGGACGGGGCCAGGGAAATAATTTCTTTGGTTTACAGAGCAAAGAGAAGCAGAATCAGCTGAatctgaatcagaatcagctgaATCTGATGTGGACCAGGATAGTGACTGATagaaaaatattgtaaatataatCAAAATCACAGaaactgctttaaaaaaaactttggatGTGTGTTACAAGTCATACAGGAAGTCATACCACTATTACCTACTACAGAAACAAGGGAATGAAACGCAGTGCTGAACTTTTCCAGGAGACCTGCTTTACATTATCACTAggttacaaaagaaaaaaattacttCGACATCTGTTAGGAAACCCAGGTATTTCAGATTTTAtgagtatatacatatactgtaaatatacacaGTATGTACAATATGACAATATGTATCTGTCAGTGGATTGTCAGAATGTCTTTGTAACACAATCAAGACAACAAACCAGAGTACAGGAAATTGTTTCTCTCAGATGCAAATTTTGCGTGTCCATGTAAAGATATGTGATTTTAACAGTTGTGCATTATAGTTGAACTACTGTATATACTCTGAATGATGCATATGGCTTAGTGGGAGTAGAATATGTATGCTTTTAGTTTTCATTTCCTTTCCTCTGCTCATATCAGACACCCTTGCCTCACCTTTGGCATACCTGCAGCTCATTCTCTCCTCTGAATgggaaacaaaaacatgtttctaTAGCATAATGCAAACTGAACAGCTGGAGAAATGTAGCAGCTAATGGTGTCACACACAGATATGTAGTACAGGTGAGATACAGCACGGCACAGAAAAGGACGGTCACTGGGCAGGGGTTGAGGCCTCAATTTGGATGGGCTGTGATGATGTTGTGTTCTGCAGCTTCCATCCTCCATCACCAAGGAAACAAAAATGAAGAAATGCCAGCGGACACAAAGGTGGAAGTGGCTGAGAGTAAAGACTTTAAAGGCCAGCATACACATGCAGTAGTTTGGAGACATCAGACAATTAACCAAAAAATCTCCCATTCTGTCTGATTTTGCTCCCTCAAACACCTTTAACCAATGTTGGTTACCATATAGAAAGATTCTATCATGACAATAACCATATTGATTGCATCCAATTTAGGCACTTATGTGAAAATGTTGCAAGAATGAAAAAGAGAACAAAGAGTAGAAAATCACTGTGGAAAAATCACAAATCTAACTACaaagaaaacataaagcaaTGGATTAGCCAACGCACATCTCTGCTAAATATTGCCTAAAGCACAGTTTGTGTATCATAGGTTTATATTGATTTATGATCTCCAAATGCAGTAGAGTGTGCTGTGTGAACTGTTTCCTCATTGATATTTTTGAATGCTCTCTTTCCTTTATAGATTCATTGACCTGTAGCCCGCCTGTcagaaaaacacacttaaaagCACACCCACACTTCCTGAACATGTACTCTGTACTTTGTGCCAAAAGCTCTTGGAAAACAGAGGGCAACGTTTGCTATGAAATGTCTAATTTTCTGTTGGAGTGACTTCTAATGACTGAATTTTAAAATCTATAATCATGAAGATAAGTTGAATAAAACGTCTGATTAATGTGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165199 lncRNA downstream 18139 8647857 ~ 8683430 (-) True G122838
TU165188 lncRNA downstream 88875 8604526 ~ 8612694 (-) True G122830
TU165179 lncRNA downstream 89706 8512070 ~ 8611863 (-) False G122828
TU165227 lncRNA upstream 18395 8790317 ~ 8790556 (-) True G122858
TU165228 lncRNA upstream 18742 8790664 ~ 8790898 (-) True G122859
TU165233 lncRNA upstream 109521 8881443 ~ 8885620 (-) True G122863
XR_005640855.1 lncRNA upstream 233407 9005329 ~ 9005993 (-) True LOC120569286
TU165343 lncRNA upstream 444888 9216810 ~ 9287702 (-) False G122934
XM_039818759.1 mRNA downstream 116051 8584580 ~ 8585518 (-) True LOC120570417
XM_039817906.1 mRNA downstream 118993 8442118 ~ 8582576 (-) False adarb1b
XM_039817907.1 mRNA downstream 119047 8442118 ~ 8582522 (-) True adarb1b
XM_039817905.1 mRNA downstream 210094 8442118 ~ 8491475 (-) False adarb1b
XM_039818312.1 mRNA downstream 280438 8399585 ~ 8421131 (-) True traf3ip1
XM_039817526.1 mRNA upstream 21699 8793621 ~ 8803087 (-) False ccnt2a
XM_039817525.1 mRNA upstream 21699 8793621 ~ 8803087 (-) False ccnt2a
XM_039817528.1 mRNA upstream 21699 8793621 ~ 8801976 (-) False ccnt2a
XM_039817527.1 mRNA upstream 21699 8793621 ~ 8801941 (-) True ccnt2a
XM_039817530.1 mRNA upstream 26105 8798027 ~ 8803104 (-) False ccnt2a
TU164950 other downstream 1383976 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 1522411 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 1557361 7144127 ~ 7144208 (-) True trnas-cga_8
TU164747 other downstream 2019598 6678392 ~ 6681971 (-) False LOC120569614
XR_005640909.1 other upstream 26113 8798035 ~ 8803090 (-) False ccnt2a
TU165255 other upstream 227540 8999462 ~ 9000123 (-) True G122878
TU166096 other upstream 3847431 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 6012639 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 6012639 14784561 ~ 14789906 (-) False G123886

Expression Profile