RNA id: XR_005640855.1


Basic Information

Item Value
RNA id XR_005640855.1
length 382
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC120569286
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 9005329 ~ 9005993 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTCTACAGAAATGGCTGCGTTTGtttgcgtcattAGGTGATTTTACAAAGAGCTGGGACAATGTAGCTGTGTTAGTTGATGAAACACTTATACCACAAGagcTGTGTAGCCCGATCCTACAGACCCCAACACAccagaacataaaacaaaaggtccttctaataaggaataagaacgttggaaacagACAATCCGTTCCTGAACAAAGGATCCGTAAGGGTGATGGCTACTCGATAGCACATAGGGCTGAAATCAACCATGATAAAAGGCCGTGTGCTTCTCTAAACCTCTCTGTGAAAGCTGCTACCCCTAAAAACGTTCACCATCGTAAGCCTAAGAAGCAATTTATTGAGgtgagttgaaaagaaaaacggtaaaa

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165233 lncRNA downstream 119709 8881443 ~ 8885620 (-) True G122863
TU165228 lncRNA downstream 214431 8790664 ~ 8790898 (-) True G122859
TU165227 lncRNA downstream 214773 8790317 ~ 8790556 (-) True G122858
TU165200 lncRNA downstream 281747 8679334 ~ 8723582 (-) False G122838
TU165199 lncRNA downstream 321899 8647857 ~ 8683430 (-) True G122838
TU165343 lncRNA upstream 210817 9216810 ~ 9287702 (-) False G122934
TU165345 lncRNA upstream 210817 9216810 ~ 9287702 (-) True G122934
TU165364 lncRNA upstream 318407 9324400 ~ 9324800 (-) True G122950
TU165366 lncRNA upstream 321768 9327761 ~ 9330473 (-) True G122952
TU165405 lncRNA upstream 627511 9633504 ~ 9641776 (-) True G122983
XM_039817175.1 mRNA downstream 103545 8887863 ~ 8901784 (-) True LOC120569317
XM_039817531.1 mRNA downstream 194743 8804375 ~ 8810586 (-) True acmsd
XM_039817530.1 mRNA downstream 202225 8798027 ~ 8803104 (-) False ccnt2a
XM_039817529.1 mRNA downstream 202239 8798027 ~ 8803090 (-) False ccnt2a
XM_039817528.1 mRNA downstream 203353 8793621 ~ 8801976 (-) False ccnt2a
XM_039817136.1 mRNA upstream 27919 9033912 ~ 9122327 (-) True pth2ra
XM_039818573.1 mRNA upstream 140599 9146592 ~ 9175548 (-) False mrasa
XM_039818572.1 mRNA upstream 140599 9146592 ~ 9175548 (-) True mrasa
XM_039818128.1 mRNA upstream 370536 9376529 ~ 9474838 (-) False LOC120569925
XM_039818126.1 mRNA upstream 370536 9376529 ~ 9474838 (-) True LOC120569925
TU165255 other downstream 5206 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 202239 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 1687736 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 1826171 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 1861121 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 3613360 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 5778568 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 5778568 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 5978492 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 6411207 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile