RNA id: XR_005640866.1


Basic Information

Item Value
RNA id XR_005640866.1
length 2213
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC120569337
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15888137 ~ 15891006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCCAGGCCCTGGCCTCTGACCAGGGGCCATCCACATCAACACTGCTTACACTCCACCATACCTCCCAGCTACTGGCCCAGCCAACCAGCTCTATACACACACTGAGGCAGACAGGGAGAGGAACAAGGCTGGAGAAATGAAGACTGCGAAaatgtgagcgtgtgtgtgtgcgtgtgcatgcatgtgtgcgtgcgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcatgcgtgcgtgtgtgtgtgtgtgtataggtgggCGGATGCCGATGAGGGCAAGGAGCAAcgaagaggagaaagaaataaagatagAAATGGAGTCAGAGAATTCAGCCCCATGAAAGAAGACAGAAGAATAAAAGACAGGCTAAGGAGAAGACAAGGCCTCAGCTGTGCGCCGCACTGATCTACACACTGTGATTACCTGGAGCAGAAAACCGAATGTAAAGGCCTTGGGCTGGCTTTGATATTTCCATCGTTTGTTTGTCTGCTATGACCTGGACTACATTTAACAGACCTAGACTGGAGGTCAGTAGGAATCAAGGGATGGCCAAGCACATACAGggttttcctctccttctctatTAAACTCTCACCAACACTCATTATAGTTACCTTTTGTCTAGTATTTGTTGCCATTACATAGTCTAGGCACAACTAGAGACCACTCAATAATCAAGGTGTTGTTGGATAATGGCAGAAACAAATGAGAAGTATTAAGTTGAGTATATGTCTGGTAATACAGAATAAGGATGTCTTTTGTCTTGGCTGGCATTCTTTTCTAAGACAGTGACTTGCAGATGGGGGTGGTAGCTGAAAGGTGTCCTCCAATTATCAAGGTATTACACTGCTAAAACTATAAGCATGCACTATGGGAGCCTAAGAGGAGACAACGCTTCATTAGAGACAAGaatagagttttttttattattattattgttattattattattattattattattattattattattattattattattattattattattattaaggtaTTGAGTaactatttctttaaagttttaaacttTCCAGCACAACCTGCTCTGATTACCCTGGGTTTACCAATATAACTAAGTGGTTTATATGAAGGAGGCAGGATTGGTAATTACAAGCCAATAATCACCGTTTACTACCGAAGCTGCAGAGTAACACTGAATATAAAAGAAAATTGATTAATGCTTAATAAGGTGACCAAATGTGGAGCTTAGCTATGTACTATTCAATAAAGCAAAAAATGAGTGTCAGTATGGATGGCCCAATTGTTTCTCTGCAGTGCACCACTCTCCCAATCATGAAGAGATCACAGCTAAGTTGTGAAACATTATATCATGCATACCAAATATCAGTAGCACATTTTGATCACTGAAGTCAGCCACAACTGCCTGAAACTGTCTTCAACATGCTCCTGTGAAACAATCAGTTGATTAATTAGTTAGTCAATCGACAAAAAATAtgataataatcataatggaaaaagtcatttttcaagcaaaagtGTCTTCTCAATTGCCAagatatttttcttttccttaacttatGTGATGGTAAACTGAAAATCACCAAACCATCAATTAATATGAGTAATTTTTGGCGGCAGCCCTTCTTAGTTTATGGATATTTTTGTAGGAGATTTTCTATTGACAAAGGCAGGTCATGCTCTCCTGAGCCAGTGATCCTATCCAGTGATAGTATAAGAGTGCTATTACTATTATAAGAGAAGTATTTTTACACAGATTTTTTGATGGTTTTTGGTTCAGTCAGATGTCAAATCCAATGGTGCAAAATGTTGCTTTTGTCAGTGAATTTTCATACTTATATTGTATTAGTGGGTTTATAAAGTTAGCAAATAAGAACTAATCAGGTAgtattcttttaaaaataaaagtattttataGCAAAAACAGGCACACAGCAAAAATTCTGGTGTTGGTAATCATCTGTGCTTATATCACGACTAACTAACTGAACCAACTATAGATGACATGGCAGAAAATGCTGTTTGAAACATTGTTTACTATAGTCTACATCTAAATATTGTACAGAACTTGGAAGCTCTGTaaaacagtatttatttttgaatgtgtgtctgtataagTGCTTATAAGTATCCTTAATGTTATGTTGCTTTATCCCTCTAAgatgtgaaaatgaaataaaaactagTCACAAAAATGA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641030.1 lncRNA upstream 148179 15715606 ~ 15739958 (+) True LOC120570206
TU167012 lncRNA upstream 227278 15659407 ~ 15660859 (+) False galnt13
TU166967 lncRNA upstream 314289 15507013 ~ 15573848 (+) True sumo3b
TU166973 lncRNA upstream 320676 15536535 ~ 15567461 (+) True G124150
XR_005640857.1 lncRNA upstream 471933 15415408 ~ 15416204 (+) True LOC120569294
TU167069 lncRNA downstream 21209 15912215 ~ 15912428 (+) True G124229
TU167099 lncRNA downstream 79976 15970982 ~ 15977854 (+) False LOC120570321
TU167186 lncRNA downstream 389593 16280599 ~ 16280878 (+) True G124323
TU167189 lncRNA downstream 389938 16280944 ~ 16285287 (+) True G124325
XR_005640929.1 lncRNA downstream 413757 16304763 ~ 16310641 (+) True LOC120569637
XM_039818964.1 mRNA upstream 191563 15668278 ~ 15696574 (+) True kcnj3a
XM_039818325.1 mRNA upstream 229857 15618514 ~ 15658280 (+) False galnt13
XM_039818616.1 mRNA downstream 11681 15902687 ~ 15909852 (+) True LOC120570324
XM_039818612.1 mRNA downstream 82255 15973261 ~ 15977874 (+) True LOC120570321
XM_039818613.1 mRNA downstream 82255 15973261 ~ 15977874 (+) False LOC120570321
XM_039818611.1 mRNA downstream 87280 15978286 ~ 15980899 (+) True upp2
XM_039818606.1 mRNA downstream 122559 16013565 ~ 16096337 (+) True LOC120570318
XR_005640926.1 other upstream 732251 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 1654067 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 2210791 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2534052 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 2608271 13049758 ~ 13279866 (+) True G123539
TU167128 other downstream 208265 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 1106775 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 1236875 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 1969154 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 1969747 17860753 ~ 17880726 (+) False hoxd10a

Expression Profile