RNA id: XR_005640929.1


Basic Information

Item Value
RNA id XR_005640929.1
length 630
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120569637
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16304763 ~ 16310641 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCCGTCATATCCGCACTGGAAATACACAGGGCTTCCAGTAACAGGCCTCGCCCATGGAGCTCTAGCCACAGGATAACAACATGAGCACAGCAGAGCCTGTATCTCTCCAGCAGTGTTGGACCTGGACCACAGCCCGAGCAGCAGGTATTCTCATTATGCATACCGTGGTCTATCTGAATTTTTCATCACACGCAGGAACACAACACTGCCATTTCAAATTACAAAAACCAAAcactcCATGGTCAAGCCCCTCCGTATGTTTCCGATCTCCTGTCCACTTACTCTGCTGCCAGGGCACTAAGGTCCACAACCGAACAACTCCTCGTCATCCCCCAGACACCGAAAAACCAGAGGGGACCGAGCCTTTTCTGTAGTAGCCCGCAAACTCTGGAATGCCCTCCCACCCCATATCAAATCCTGTAATACAATTGCCAAAAAGATTCAGAGCTATGAACTGAACTCAACTTTTTCTTATCTTTTTGTATTTGCAAATTTTGTTCCATAGTTGTTTTTATTctatgtcacattatttgacTTTACCTTGCCTAACTATATTCATGGAACGTTGCACACttgattatgtatttttaaggcATACTGTTTCTGCCTTCCCTGCTctacctgtaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167189 lncRNA upstream 19476 16280944 ~ 16285287 (+) True G124325
TU167186 lncRNA upstream 23885 16280599 ~ 16280878 (+) True G124323
TU167099 lncRNA upstream 326909 15970982 ~ 15977854 (+) False LOC120570321
TU167069 lncRNA upstream 392335 15912215 ~ 15912428 (+) True G124229
XR_005640866.1 lncRNA upstream 413757 15888137 ~ 15891006 (+) True LOC120569337
TU167209 lncRNA downstream 70606 16381247 ~ 16381693 (+) True G124339
TU167248 lncRNA downstream 103968 16414609 ~ 16416452 (+) True G124371
XR_005641072.1 lncRNA downstream 157399 16468040 ~ 16468636 (+) True LOC120570498
XR_005641071.1 lncRNA downstream 157399 16468040 ~ 16468636 (+) False LOC120570498
TU167297 lncRNA downstream 286067 16596708 ~ 16630114 (+) True G124408
XM_039818986.1 mRNA upstream 97172 16105436 ~ 16207591 (+) False tanc1b
XM_039817601.1 mRNA downstream 6733 16317374 ~ 16322778 (+) False tank
XM_039817602.1 mRNA downstream 6922 16317563 ~ 16322778 (+) True tank
XM_039818487.1 mRNA downstream 26568 16337209 ~ 16341623 (+) True tbr1b
XM_039818484.1 mRNA downstream 33394 16344035 ~ 16377228 (+) True slc4a10b
XM_039818485.1 mRNA downstream 33394 16344035 ~ 16377228 (+) False slc4a10b
TU167128 other upstream 203152 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 1148877 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 2070693 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 2627417 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2950678 13353306 ~ 13354085 (+) True G123633
TU167490 other downstream 687140 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 817240 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 1549519 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 1550112 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 1550231 17860872 ~ 17880726 (+) False hoxd10a

Expression Profile