RNA id: XR_005641030.1


Basic Information

Item Value
RNA id XR_005641030.1
length 349
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120570206
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15715606 ~ 15739958 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCAGGGTCGAATCGATGTCTATCGGTGAAAATCAATTAGCAGGAATATTTTTCCCCACCTGGATACAACCTTAATAGAAGAATCCATGAGGAACCTGGGgatgtgtttaaaaaatagcGGCCTAGGAGGAGCATTATGATTCACTTATCCAAATGTAAATGAGAAGCCATGGACGTCTGCTCCTTTGGGAATCTCCACCCCTTTGAAAAGAAAATAGAGGTTAAAAATCTGCTAAACGAGTTAGCAGCAACCAGGATCCCTCTCTTCCACAGGCCTGGGACCAGTGTTGAACCTGGCCACTGAAATAACTTGtcgaccaaagtatggtggtggactggtagctggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167012 lncRNA upstream 54747 15659407 ~ 15660859 (+) False galnt13
TU166967 lncRNA upstream 141758 15507013 ~ 15573848 (+) True sumo3b
TU166973 lncRNA upstream 148145 15536535 ~ 15567461 (+) True G124150
XR_005640857.1 lncRNA upstream 299402 15415408 ~ 15416204 (+) True LOC120569294
TU166819 lncRNA upstream 465777 15243201 ~ 15249829 (+) False LOC120569306
XR_005640866.1 lncRNA downstream 148179 15888137 ~ 15891006 (+) True LOC120569337
TU167069 lncRNA downstream 172257 15912215 ~ 15912428 (+) True G124229
TU167099 lncRNA downstream 231024 15970982 ~ 15977854 (+) False LOC120570321
TU167186 lncRNA downstream 540641 16280599 ~ 16280878 (+) True G124323
TU167189 lncRNA downstream 540986 16280944 ~ 16285287 (+) True G124325
XM_039818964.1 mRNA upstream 19032 15668278 ~ 15696574 (+) True kcnj3a
XM_039818327.1 mRNA upstream 54592 15618514 ~ 15661014 (+) True galnt13
XM_039818325.1 mRNA upstream 57326 15618514 ~ 15658280 (+) False galnt13
XM_039818324.1 mRNA upstream 57333 15618514 ~ 15658273 (+) False galnt13
XM_039818326.1 mRNA upstream 57333 15618514 ~ 15658273 (+) False galnt13
XM_039818616.1 mRNA downstream 162729 15902687 ~ 15909852 (+) True LOC120570324
XM_039818612.1 mRNA downstream 233303 15973261 ~ 15977874 (+) True LOC120570321
XM_039818613.1 mRNA downstream 233303 15973261 ~ 15977874 (+) False LOC120570321
XM_039818611.1 mRNA downstream 238328 15978286 ~ 15980899 (+) True upp2
XM_039818606.1 mRNA downstream 273607 16013565 ~ 16096337 (+) True LOC120570318
XR_005640926.1 other upstream 559720 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 1481536 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 2038260 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2361521 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 2435740 13049758 ~ 13279866 (+) True G123539
TU167128 other downstream 359313 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 1257823 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 1387923 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 2120202 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 2120795 17860753 ~ 17880726 (+) False hoxd10a

Expression Profile