RNA id: XR_005641044.1


Basic Information

Item Value
RNA id XR_005641044.1
length 735
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id LOC120570334
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 10250176 ~ 10321796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttagtctctgtatTGTCTTTGTCTTGTATCAGTTCCTCATCTTGTCTTGCTTCTTTGTCTTCCCTTCCTGGTTTTCCCTGCGTCGTTCCTtcctggttgtttttttttccccctgtcaTGTCTTCTGGTTATCTTCGTTTGTGCCTGCCTACCTCTGGACACCTTTTGTTCCATGGCAAAGCTCCAGATGGGACCGTAGAGGAGGTTGATAAAGTGGTGAAGTTCAAAGCTCCCACTGAATAAGAGGAGGAAGCAGCAAAGAACAAACGAGCGGCCCATTCTTACTGGCTCACTGGTCCAGGCAGTGTGCCAGACAATGGCCAACCAGGACTTTTCATCGGGTCAGTTTGCTCTGGGAACTCCAGCCTCCAGATCCTGCTAACGCTAATGGACTTCAGAGATGTGAGCTGCCAGGAGGGGGTGTTGCAGTTAGAGCCTGAGGCTGAATCATATTTGGACCTAAGGTGCGATTGTGGTGCCAGCCAGCAGTCCACCTTAGTGACCCCACCCAAGTGGGTGACATCTCATCCAACATCCAACTGTCACCCACTGACCTTAAAGGTTCCTTCTGATGTTTCTTCGTCGTCCCTGTAAGTGGACCAGGCCGAATCAGCACTCCTCCCCTTCATACATCAATGTAATTTGGCACTGGATTGGACTGGACGTCATTATTTTTACTCTCATGACATGGGGATGAGTTGGCCAGTATTCCCTTGTCTTGCTCTCTGGGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640863.1 lncRNA upstream 39679 10209311 ~ 10210497 (+) False LOC120569328
TU165518 lncRNA upstream 65092 10141347 ~ 10185084 (+) True G123074
TU165524 lncRNA upstream 97896 10147001 ~ 10152280 (+) True G123078
TU165396 lncRNA upstream 536538 9693295 ~ 9713638 (+) True G122980
TU165395 lncRNA upstream 570422 9675190 ~ 9679754 (+) True G122979
TU165591 lncRNA downstream 307749 10629545 ~ 10629939 (+) True G123118
XR_005640883.1 lncRNA downstream 334150 10655946 ~ 10658786 (+) True LOC120569520
TU165607 lncRNA downstream 354712 10676508 ~ 10676745 (+) True G123132
TU165608 lncRNA downstream 370469 10692265 ~ 10692469 (+) True G123133
TU165623 lncRNA downstream 479693 10801489 ~ 10801853 (+) True G123148
XM_039817192.1 mRNA upstream 32526 10211110 ~ 10217650 (+) True LOC120569327
XM_039818582.1 mRNA upstream 146009 10099932 ~ 10104167 (+) True LOC120570306
XM_039817213.1 mRNA upstream 295299 9949090 ~ 9954877 (+) False fev
XM_039817214.1 mRNA upstream 295299 9949090 ~ 9954877 (+) False fev
XM_039817211.1 mRNA upstream 295299 9951178 ~ 9954877 (+) True fev
XM_039818282.1 mRNA downstream 14195 10335991 ~ 10618695 (+) True lrp1bb
XM_039818173.1 mRNA downstream 808261 11130057 ~ 11134144 (+) True rabl3
XM_039818994.1 mRNA downstream 834794 11156590 ~ 11175940 (+) True nxph2a
XM_039818995.1 mRNA downstream 834794 11156590 ~ 11175940 (+) False nxph2a
XM_039818288.1 mRNA downstream 930121 11251917 ~ 11259053 (+) True LOC120570060
TU165424 other upstream 321285 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 325336 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 1453430 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 3101137 7146625 ~ 7149039 (+) True G122588
TU164440 other upstream 5038328 5209133 ~ 5211848 (+) False ybey
TU165581 other downstream 285688 10607484 ~ 10618696 (+) False lrp1bb
TU166170 other downstream 2727962 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 3031510 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 3313790 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 3911536 14233332 ~ 14234070 (+) True G123742

Expression Profile