RNA id: XM_039791684.1


Basic Information

Item Value
RNA id XM_039791684.1
length 545
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120553352
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 158592 ~ 175149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAAAAACACTGATACtgtacgtctgtgtgtgtgtgtgtacgtctgtgtgtgtgtgtgtgttgcgtgcgCACGTGTCCTTGTCAGGGTGAAGCAAGCGAGGCAGCGGAGCACGAAACACAACACAGCCACAGACATGAACCACCTCCTGAAGGTTCCAGTTCTGGCCAGCCGTGCCTTCAGCAGCTCTGCCAGACAGCTAAAGAACAAAGTCCCCGAGGCCCAGAAACTCTTCCAGGAGGACAACGGGTTGCCGGTCCACATCAAGGGAGGAACCTTGGACGTCGTGCTCTACCGGGCGACCATGACGCTAACTCTCGGAGGAACCTGCTACTCTCTGTACTGGCTGCTCGTTGCCTCAATGCCACAGAAGAAAGCGTAGCGAAGAACGGGCTCCGTCTATTGCGTGGAGAGCAATGCTCGCCTCCGTCTAACACTAATGTTTGTTGTGTACAATTCTCTGATCGGATGTAATCACAAGTTGTCCTGCTTTCAACATGGCAACGATTAATATGTAAAAAAGTGTGAAGAAAAGTTTAAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17295 lncRNA upstream 39094 56937 ~ 119498 (+) False G13009
TU17294 lncRNA upstream 39094 118088 ~ 119498 (+) True G13009
TU17302 lncRNA upstream 62879 90306 ~ 95713 (+) True G13015
TU17292 lncRNA upstream 103190 55149 ~ 55402 (+) True G13008
TU17291 lncRNA upstream 106578 51495 ~ 52014 (+) True G13007
TU17323 lncRNA downstream 50581 225730 ~ 227787 (+) True G13033
TU17416 lncRNA downstream 68590 243739 ~ 295849 (+) True G13098
TU17418 lncRNA downstream 82863 258012 ~ 258581 (+) True G13099
TU17419 lncRNA downstream 82863 258012 ~ 279306 (+) False G13099
TU17432 lncRNA downstream 134055 309204 ~ 356455 (+) False G13106
XM_039780996.1 mRNA downstream 211224 386373 ~ 387386 (+) True triap1
XM_039822841.1 mRNA downstream 378017 553166 ~ 570496 (+) True gpr171
XM_039822831.1 mRNA downstream 378018 553167 ~ 570496 (+) False gpr171
XM_039787484.1 mRNA downstream 642976 818125 ~ 842046 (+) True shkbp1
XM_039819667.1 mRNA downstream 810459 985608 ~ 989953 (+) False LOC120570981
TU17429 other downstream 134055 309204 ~ 310881 (+) False G13106
TU17435 other downstream 134055 309204 ~ 310881 (+) True G13106
TU17437 other downstream 134055 309204 ~ 326304 (+) False G13106
TU17438 other downstream 134055 309204 ~ 325036 (+) False G13106
TU17440 other downstream 134055 309204 ~ 363950 (+) False G13106

Expression Profile