RNA id: TU17418


Basic Information

Item Value
RNA id TU17418
length 231
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G13099
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 258012 ~ 279306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacatacacacacacacacagacacacacacacacacacacacacacacacacagacacacacacacacacacacagacacacacagacacacacacacacacacagacacacacacacacacacacacacacagacagacacacacacacacacacacacacacagagacagacacacacacacacacacacagacacacacacacacacaaagacagacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17327 lncRNA upstream 29929 173277 ~ 228083 (+) True G13035
TU17323 lncRNA upstream 30225 225730 ~ 227787 (+) True G13033
TU17324 lncRNA upstream 31792 172922 ~ 226220 (+) False G13033
TU17295 lncRNA upstream 138514 56937 ~ 119498 (+) False G13009
TU17432 lncRNA downstream 50623 309204 ~ 356455 (+) False G13106
TU17458 lncRNA downstream 105880 364461 ~ 383817 (+) False G13122
TU17459 lncRNA downstream 105880 364461 ~ 374380 (+) True G13122
TU17464 lncRNA downstream 119924 378505 ~ 379682 (+) True G13126
TU17496 lncRNA downstream 154562 413143 ~ 550753 (+) True G13144
XM_039791684.1 mRNA upstream 82863 158592 ~ 175149 (+) True LOC120553352
XM_039780996.1 mRNA downstream 127792 386373 ~ 387386 (+) True triap1
XM_039822841.1 mRNA downstream 294585 553166 ~ 570496 (+) True gpr171
XM_039822831.1 mRNA downstream 294586 553167 ~ 570496 (+) False gpr171
XM_039787484.1 mRNA downstream 559544 818125 ~ 842046 (+) True shkbp1
XM_039819667.1 mRNA downstream 727027 985608 ~ 989953 (+) False LOC120570981
TU17319 other upstream 82881 158641 ~ 175131 (+) False LOC120553352
TU17429 other downstream 50623 309204 ~ 310881 (+) False G13106
TU17435 other downstream 50623 309204 ~ 310881 (+) True G13106
TU17437 other downstream 50623 309204 ~ 326304 (+) False G13106
TU17438 other downstream 50623 309204 ~ 325036 (+) False G13106
TU17440 other downstream 50623 309204 ~ 363950 (+) False G13106

Expression Profile