RNA id: TU17459


Basic Information

Item Value
RNA id TU17459
length 1636
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G13122
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 364461 ~ 383817 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTCCGGAGTAATGCTCCCCTCCTGAGGACTTGGCGTATTTCCTCATGTAATATTCACCCAGCGCCTCCTCTCTGGAGTCTCTCCAGAGGTTCTGCAGCCTTCTGGATCCAGAGTGGTCTTCATCCAGAACCACGTGGTCGATGTTcgacaCTTCAGCCTCCTCTGCTCAGCATCgaccaatgagagagagagagagagagagagagagagagagagtataaaGAGGAGGCAAGAGGAAGAGCAGTAGCGGAGATAAAGtaggggaaggagggaggacagagaagagaaagaacagaAGGGAAAGGAgttgagaaaacaaaaaagggagagagggagggaggtagaAGGTGTGGTAGAAGCAGAAGAAAAGTAAGACGAAGAGATGGAGaaccaaaaaagaagaaagagaagcaaTGCAGAGGCAGCAGAAaggaaagaataataaaaaggtGACAGTGAGCaagagatggagatggataAAAGGGGCCAAGagcaggatgggagaaaaaaaagggaagaaagggTAAAGcatgaagagagaaaaaaggaggggaaacggacaaaaaaaaaaagaaaaagaggggaaAGAGGGGGATGAAGAGGTGAGGACAGGAGATAGTGTTCATCAGGGGCAGGGCAGGGCACACAGGCAGCAGACAGGCAGCCACAACACAAAGCATGATGggagaaacagaaaaacaagcgAGTTAATTGGATGGTGACTGTGAGAAGCACGAGACCAGTGGAGGGTTCAGGAAGGGTCAAAGTACAGCAGAAACTAAACCGACACAAACTTCGTCTCGGTGTGCAAGTGGCTGATGGGAAACGCAGTCTTTGAAGCCGGTCCGGTAaggttaaaggaacacaccgactttttgggactttatcttattcaccgtaacccccagagttagacaagtccatacagacccttctcatctcagtgcgtgctgtaacgctgtctgacggctccagcgttagcttagcttagcacagaacaggcaggtgaatggttccaactagcctactgctccgaataagtgacgaaataacaccaacatgttcctgtttacatgttgtgatttgtggagtcacagcgtgtacaaaaaacaacgtaacatgagacacagccatcttctaaccagtaaacaaaccgggaactatattctcaggcggaagaatatagtacttgggcggagtgatatgctttgcagcaagcctgtctgagaatatagttcccggtttgtgcTAATattgtgctcagtgctgtatagttttacgtatccaatttatttagtattagagcactgcagaatgtttggtttctgaagctatgaattaaatgtcctacatggctttaatagaaaaaaatgtatttgacgcatcgagatatcgaagacgtgcaggaaattgtcacaggtcggattcgaaccttgGACCTCTGTGTCAAGGCGTgaacctctcagtacatgtgcgcctgctctacccactgagccaacccggccacagactcagattaatatgcTAAGTGTCTGACaccattatggaaaggatcccttcagagatagacctttaaaacctctttgagacctttctgtttaaccagaaacagctctgaagtctctacctctaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17432 lncRNA upstream 8006 309204 ~ 356455 (+) False G13106
TU17416 lncRNA upstream 68612 243739 ~ 295849 (+) True G13098
TU17419 lncRNA upstream 85155 258012 ~ 279306 (+) False G13099
TU17418 lncRNA upstream 105880 258012 ~ 258581 (+) True G13099
TU17323 lncRNA upstream 136674 225730 ~ 227787 (+) True G13033
TU17464 lncRNA downstream 4125 378505 ~ 379682 (+) True G13126
TU17496 lncRNA downstream 38763 413143 ~ 550753 (+) True G13144
TU17497 lncRNA downstream 41922 416302 ~ 416570 (+) True G13145
TU17510 lncRNA downstream 102886 477266 ~ 537230 (+) True G13158
TU17524 lncRNA downstream 152235 526615 ~ 527087 (+) True G13172
XM_039791684.1 mRNA upstream 189312 158592 ~ 175149 (+) True LOC120553352
XM_039780996.1 mRNA downstream 11993 386373 ~ 387386 (+) True triap1
XM_039822841.1 mRNA downstream 178786 553166 ~ 570496 (+) True gpr171
XM_039822831.1 mRNA downstream 178787 553167 ~ 570496 (+) False gpr171
XM_039787484.1 mRNA downstream 443745 818125 ~ 842046 (+) True shkbp1
XM_039819667.1 mRNA downstream 611228 985608 ~ 989953 (+) False LOC120570981
TU17440 other upstream 511 309204 ~ 363950 (+) False G13106
TU17437 other upstream 38157 309204 ~ 326304 (+) False G13106
TU17438 other upstream 39425 309204 ~ 325036 (+) False G13106
TU17441 other upstream 39425 309204 ~ 325036 (+) False G13106
TU17429 other upstream 53580 309204 ~ 310881 (+) False G13106
TU17494 other downstream 12021 386401 ~ 446553 (+) False triap1
TU17495 other downstream 12021 386401 ~ 393047 (+) False triap1
unassigned_transcript_73 other downstream 267292 641672 ~ 641763 (+) True trnar-ucu_1
unassigned_transcript_74 other downstream 268122 642502 ~ 642593 (+) True trnar-ucu_2
unassigned_transcript_75 other downstream 269668 644048 ~ 644139 (+) True trnar-ucu_3

Expression Profile