RNA id: TU17613


Basic Information

Item Value
RNA id TU17613
length 497
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G13225
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 635246 ~ 727829 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaagactCCAgaccggacacacacacacacacacacacacagagacacacagagacacacagagacacatacacacagagacacacagagacacagagacacacacacacacagagacacacagagacacacagagacacacagagacacacacacacacagagacacacagagacacacagagacacacacacacacagacacacacacacagaacacagagacacacagagacacacacacagagacacacagagacacacagagacacacacacacacagagacacacagagacacacagagacacacacacacacacacagagacacaggcacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacagagagacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacaccacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641076.1 lncRNA downstream 2261 718249 ~ 719258 (-) True LOC120570540
TU17619 lncRNA downstream 4451 664880 ~ 717068 (-) False G13226
TU17620 lncRNA downstream 4451 697216 ~ 717068 (-) True G13226
XR_005641669.1 lncRNA downstream 125262 584727 ~ 596257 (-) True LOC120573257
TU17605 lncRNA downstream 152536 568632 ~ 568983 (-) True G13220
TU17624 lncRNA upstream 6139 733968 ~ 734363 (-) True G13230
TU17627 lncRNA upstream 31144 758973 ~ 759718 (-) True G13232
TU17628 lncRNA upstream 31144 758973 ~ 759718 (-) False G13232
TU17629 lncRNA upstream 32250 760079 ~ 760338 (-) True G13233
TU17631 lncRNA upstream 37919 765748 ~ 765989 (-) True G13235
XM_039822798.1 mRNA downstream 7824 473553 ~ 713695 (-) False plekhg2
XM_039822818.1 mRNA downstream 7825 473553 ~ 713694 (-) False plekhg2
XM_039822788.1 mRNA downstream 7825 473553 ~ 713694 (-) False plekhg2
XM_039822807.1 mRNA downstream 7825 473553 ~ 713694 (-) False plekhg2
XM_039822779.1 mRNA downstream 7825 473553 ~ 713694 (-) False plekhg2
XM_039785560.1 mRNA upstream 12623 740452 ~ 750497 (-) True si:ch211-137a8.2
XM_039822610.1 mRNA upstream 39060 766889 ~ 778667 (-) True LOC120573127
XM_039786134.1 mRNA upstream 58851 786680 ~ 789067 (-) True LOC120549306
XM_039819198.1 mRNA upstream 120841 848670 ~ 1413931 (-) True LOC120570713
XM_039820204.1 mRNA upstream 174518 902347 ~ 952303 (-) False LOC120571318
unassigned_transcript_80 other downstream 56093 665333 ~ 665426 (-) True trnar-ucu_8
unassigned_transcript_79 other downstream 67724 653704 ~ 653795 (-) True trnar-ucu_7
TU17557 other downstream 334135 386401 ~ 387384 (-) True G13195
TU17487 other downstream 337353 361387 ~ 384166 (-) False supt5h
TU17469 other downstream 396320 309150 ~ 325199 (-) True G13128
TU17622 other upstream 5439 733268 ~ 736542 (-) True G13228
TU17625 other upstream 12629 740458 ~ 747759 (-) False si:ch211-137a8.2
TU17626 other upstream 12629 740458 ~ 750503 (-) False si:ch211-137a8.2
TU18086 other upstream 241867 969696 ~ 977699 (-) False LOC120571545
TU18084 other upstream 400062 1127891 ~ 1197686 (-) True G13587

Expression Profile