RNA id: TU17702


Basic Information

Item Value
RNA id TU17702
length 1384
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G13284
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 993112 ~ 1035042 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagtaggctagttggaaccagttacctgcaggatctgtgctgggctaagcgaatgctggaaccgtcagacagcgttacagcacgcacggagatgagaagggtatgtatcgacttgtcttactctgggggttatggtgaataagctaaattcccaataagtcggcgtgttcctttaagattaGTTGTCTgtcccaagatggcggcggtACAGACACAGTTTAAATACATTAACTGTTAAAGTCATTTTTAAGtgacaataaactgaatatttcagCAATTTGACAGCTTAGTAAACAGCGATGGGGATTTTTGTAAATGGTATTTACAAGGTGATTAATTAAGAACAACAAATACTTCTTCACAGCAGCATTAGTTAAAAAGCACTAGCAGCTGAAACCTAAACTCAGAATATTTTATTACAGGAAAACAAACTAATTTTGAGTGGAATAAATCCCTTCAAAAGGGAGGGAGTGTAATGTGTAGTCCTAGCCAGGATAACatccatgctgttcagaagataaagttactgctggtcagccttcaatgcggagagaagatcagaaaataacaacacagctatcaggagctagcatgaggaggaggcaggaggaaacagcttggctcgGAAACATGTTCACAACGAGGCAGTGTGAACgcgctggtgagatttaaggtgAACACTCTGCAAAAAACTTTTACTACAAatatcacagctgtacggcttctctccagtgtgaatgcgttgatgtgttTTAAGGTTACTACTATGAGTAAAacttttcccacattgttcacaccagtacggcttagctccagtgtgaacacgctggtgagatttaaggctACCGCTctcagaaaaggttttaccacATAGACCACAgatgtacggcttctctccagtgtgaatgcgttgatgtcttTTAAGGGCCCCACTCTCAGAAAAAGTttccccacattgttcacaccagtacggcttctctccagtgtgaacacgctggtgagatttaaggttACCACTCCTAGAAAAGGTTTTGCCACagtgatcacagctgtaaggcttttcttcagtgtgaatgcgttgatgtccTTTCAGGTGACtctgttgtgtgaaagctgccccacatagatcacagctgtaaggcttctctccactgtgaactctctgatgaatctttaaatatccagatgttgtgaaggatttgtcacagtgttgacagtggtgacgtttgggtccttctcctcctctccgtttctatagcaacagacaaacagagagagagagagagttagtgaaCAACCTTCTTAAACCCTGGACTTGCTCTCACTCacaattttcactcttcatgcaataatttatgacaaaatgaaggaaaatatgTGCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17666 lncRNA upstream 94246 896198 ~ 898866 (+) False G13262
TU17545 lncRNA upstream 237191 632705 ~ 755921 (+) False G13186
TU17726 lncRNA downstream 17035 1052077 ~ 1068893 (+) True G13301
TU17743 lncRNA downstream 94554 1129596 ~ 1130464 (+) True G13318
TU17746 lncRNA downstream 110701 1145743 ~ 1182291 (+) True G13321
TU17755 lncRNA downstream 180798 1215840 ~ 1285450 (+) True G13329
TU17667 lncRNA downstream 244638 1279680 ~ 1281593 (+) False G13262
XM_039819681.1 mRNA upstream 3041 986129 ~ 990071 (+) False LOC120570981
XM_039819667.1 mRNA upstream 3159 985608 ~ 989953 (+) False LOC120570981
XM_039819673.1 mRNA upstream 3159 986129 ~ 989953 (+) True LOC120570981
XM_039819700.1 mRNA upstream 3300 986131 ~ 989812 (+) False LOC120570981
XM_039819694.1 mRNA upstream 3355 986131 ~ 989757 (+) False LOC120570981
XM_039819987.1 mRNA downstream 1062559 2097601 ~ 2116993 (+) False LOC120571197
XM_039819978.1 mRNA downstream 1062559 2097601 ~ 2116992 (+) True LOC120571197
XM_039819785.1 mRNA downstream 1089317 2124359 ~ 2541178 (+) False LOC120571101
XM_039819795.1 mRNA downstream 1089499 2124541 ~ 2541178 (+) False LOC120571101
XM_039819803.1 mRNA downstream 1094265 2129307 ~ 2541178 (+) False LOC120571101
TU17630 other upstream 227135 765539 ~ 765977 (+) True G13234
unassigned_transcript_81 other upstream 318739 674282 ~ 674373 (+) True trnar-ucu_9
unassigned_transcript_78 other upstream 343381 649640 ~ 649731 (+) True trnar-ucu_6
unassigned_transcript_77 other upstream 344541 648480 ~ 648571 (+) True trnar-ucu_5
unassigned_transcript_76 other upstream 345965 647056 ~ 647147 (+) True trnar-ucu_4
TU17665 other downstream 147340 1182382 ~ 1281593 (+) True G13262
TU17835 other downstream 516822 1551864 ~ 1559663 (+) True G13390
XR_005641197.1 other downstream 1575830 2610872 ~ 2626293 (+) False LOC120571130
TU18043 other downstream 1691277 2726319 ~ 2738188 (+) True G13555
TU18527 other downstream 1913762 2948804 ~ 2960259 (+) False zgc:162872

Expression Profile