RNA id: TU18003


Basic Information

Item Value
RNA id TU18003
length 238
lncRNA type read_through
GC content 0.40
exon number 2
gene id G13516
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2390149 ~ 2390489 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cactatctttgtggggacccttcattgacataatgcattccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctaaccttaaccatcacaagtaaatgcctaaccttaacccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttacccttaccctaaccataac

Function

GO:

id name namespace
GO:0009881 photoreceptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17971 lncRNA upstream 95261 2263464 ~ 2294888 (+) False LOC120571187
XR_005641270.1 lncRNA upstream 144688 2224840 ~ 2245461 (+) False LOC120571707
XR_005641269.1 lncRNA upstream 144688 2226386 ~ 2245461 (+) False LOC120571707
XR_005641272.1 lncRNA upstream 155604 2224837 ~ 2234545 (+) True LOC120571707
XR_005641274.1 lncRNA upstream 155604 2224837 ~ 2234545 (+) False LOC120571707
TU18005 lncRNA downstream 71255 2461744 ~ 2464878 (+) True G13518
TU18019 lncRNA downstream 171366 2561855 ~ 2671603 (+) True G13531
TU18023 lncRNA downstream 204893 2595382 ~ 2767324 (+) True G13535
XR_005641305.1 lncRNA downstream 431671 2822160 ~ 2822855 (+) True LOC120571804
TU18498 lncRNA downstream 453566 2844055 ~ 2846365 (+) True G13920
XM_039819951.1 mRNA upstream 101245 2263410 ~ 2288904 (+) True LOC120571187
XM_039778353.1 mRNA upstream 138856 2245619 ~ 2251293 (+) True LOC120544531
XM_039820032.1 mRNA upstream 166179 2208981 ~ 2223970 (+) False LOC120571219
XM_039820042.1 mRNA upstream 166179 2209003 ~ 2223970 (+) True LOC120571219
XM_039820677.1 mRNA upstream 251268 2138009 ~ 2138881 (+) True LOC120571617
XM_039778406.1 mRNA downstream 96435 2486924 ~ 2495210 (+) True LOC120544544
XM_039819810.1 mRNA downstream 117250 2507739 ~ 2541178 (+) True LOC120571101
XM_039819299.1 mRNA downstream 160572 2551061 ~ 2563179 (+) True LOC120570773
XM_039819657.1 mRNA downstream 176146 2566635 ~ 2594437 (+) True LOC120570971
XM_039820245.1 mRNA downstream 179464 2569953 ~ 2702680 (+) False LOC120571336
TU17835 other upstream 830486 1551864 ~ 1559663 (+) True G13390
TU17665 other upstream 1108556 1182382 ~ 1281593 (+) True G13262
TU17709 other upstream 1391170 997866 ~ 998979 (+) True G13286
TU17630 other upstream 1624172 765539 ~ 765977 (+) True G13234
unassigned_transcript_81 other upstream 1715776 674282 ~ 674373 (+) True trnar-ucu_9
XR_005641197.1 other downstream 220383 2610872 ~ 2626293 (+) False LOC120571130
TU18043 other downstream 335830 2726319 ~ 2738188 (+) True G13555
TU18527 other downstream 558315 2948804 ~ 2960259 (+) False zgc:162872
TU18541 other downstream 595438 2985927 ~ 2996305 (+) False LOC120544739
XR_005638531.1 other downstream 882490 3272979 ~ 3273169 (+) True LOC120554600

Expression Profile