RNA id: TU18019


Basic Information

Item Value
RNA id TU18019
length 330
lncRNA type read_through
GC content 0.37
exon number 2
gene id G13531
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2561855 ~ 2671603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGACATGGTATCAGATATAtacgacacagacacaaacataccaTAAATACTAATTTTTCATACATAAACTGGTATTTCTATAAAGTCAACATCAGCTAATAGCAGTTTTAGAAAGCAGATGGTTGAGAGCTGCTTTGTGCTGCAGTAGAAGAAGATGTGAGAGTTTTATTAGTGAGACTTTATTCAGTTCATGTTCATAGATTTGGATCATCAGCTGTCATCACCGGGTCAACACGAGGACAAGAAGCTGAAcattgttgaCATGTTCACTAACTGTTCATGTTGTTAGAACTGGATTGTTAAACATCACTCACAGCTGAATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18005 lncRNA upstream 96977 2461744 ~ 2464878 (+) True G13518
TU18003 lncRNA upstream 171366 2390149 ~ 2390489 (+) True G13516
TU17971 lncRNA upstream 266967 2263464 ~ 2294888 (+) False LOC120571187
XR_005641270.1 lncRNA upstream 316394 2224840 ~ 2245461 (+) False LOC120571707
XR_005641269.1 lncRNA upstream 316394 2226386 ~ 2245461 (+) False LOC120571707
XR_005641305.1 lncRNA downstream 150557 2822160 ~ 2822855 (+) True LOC120571804
TU18498 lncRNA downstream 172452 2844055 ~ 2846365 (+) True G13920
TU18499 lncRNA downstream 175200 2846803 ~ 2847056 (+) True G13921
TU18519 lncRNA downstream 207790 2879393 ~ 2879852 (+) True G13929
TU18522 lncRNA downstream 211212 2882815 ~ 2883942 (+) True G13930
XM_039819785.1 mRNA upstream 20677 2124359 ~ 2541178 (+) False LOC120571101
XM_039819795.1 mRNA upstream 20677 2124541 ~ 2541178 (+) False LOC120571101
XM_039819803.1 mRNA upstream 20677 2129307 ~ 2541178 (+) False LOC120571101
XM_039819810.1 mRNA upstream 20677 2507739 ~ 2541178 (+) True LOC120571101
XM_039778406.1 mRNA upstream 66645 2486924 ~ 2495210 (+) True LOC120544544
XM_039820226.1 mRNA downstream 20967 2692570 ~ 2702674 (+) False LOC120571336
XM_039820235.1 mRNA downstream 20969 2692572 ~ 2702679 (+) True LOC120571336
XM_039820666.1 mRNA downstream 34259 2705862 ~ 2707320 (+) True LOC120571608
XM_039820318.1 mRNA downstream 40073 2711676 ~ 2785208 (+) True LOC120571388
XM_039820326.1 mRNA downstream 40073 2711676 ~ 2758249 (+) False LOC120571388
TU17835 other upstream 1002192 1551864 ~ 1559663 (+) True G13390
TU17665 other upstream 1280262 1182382 ~ 1281593 (+) True G13262
TU17709 other upstream 1562876 997866 ~ 998979 (+) True G13286
TU17630 other upstream 1795878 765539 ~ 765977 (+) True G13234
unassigned_transcript_81 other upstream 1887482 674282 ~ 674373 (+) True trnar-ucu_9
TU18043 other downstream 54716 2726319 ~ 2738188 (+) True G13555
TU18527 other downstream 277201 2948804 ~ 2960259 (+) False zgc:162872
TU18541 other downstream 314324 2985927 ~ 2996305 (+) False LOC120544739
XR_005638531.1 other downstream 601376 3272979 ~ 3273169 (+) True LOC120554600
XR_005638540.1 other downstream 602874 3274477 ~ 3274667 (+) True LOC120554633

Expression Profile