RNA id: TU18260


Basic Information

Item Value
RNA id TU18260
length 346
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G13723
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 1704488 ~ 1705012 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTaacaacagactggtagaacatctccacCATTCAGCTGGTaacaacagactggtagaacatctccacCATTCAGCTGGTaacaacagactggtagaacatctccacCATTCAGCTGGTaacaacagactggtagaacatctccacCATTCAGCTGGTAACAACAGGctggtagaacatctccacCATTCAGCTGGTaacaacagactggtagaacatctccacCATTCAGCTGGTaacaacagactggtagaacatctccaaCATTCAGCTGGTaacagaagactggtagaacatctccacCATTCAGCTGGTaacaacagactggtagaacatctccacCATTC

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation
ko03015 mRNA surveillance pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641281.1 lncRNA downstream 9804 1684982 ~ 1694684 (-) True LOC120571736
TU18254 lncRNA downstream 15456 1688784 ~ 1689032 (-) True G13719
TU18161 lncRNA downstream 223839 1329699 ~ 1480649 (-) True G13654
TU18218 lncRNA downstream 239682 1413309 ~ 1464806 (-) True G13688
TU18171 lncRNA downstream 405512 1262034 ~ 1298976 (-) True G13664
TU18271 lncRNA upstream 99294 1804306 ~ 1862706 (-) True G13734
TU18163 lncRNA upstream 113050 1818062 ~ 1821409 (-) True G13656
TU18275 lncRNA upstream 116464 1821476 ~ 1826950 (-) True G13738
TU18280 lncRNA upstream 148220 1853232 ~ 1855176 (-) True G13743
XR_005641265.1 lncRNA upstream 281967 1986979 ~ 1987408 (-) True LOC120571691
XM_039778579.1 mRNA downstream 25774 1674330 ~ 1678714 (-) True LOC120544663
XM_039819284.1 mRNA downstream 39020 1639505 ~ 1665468 (-) True LOC120570757
XM_039778532.1 mRNA downstream 90246 1596198 ~ 1614242 (-) True LOC120544633
XM_039778521.1 mRNA downstream 118493 1502247 ~ 1585995 (-) True LOC120544624
XM_039820261.1 mRNA upstream 10985 1715997 ~ 1807566 (-) True LOC120571354
XM_039820267.1 mRNA upstream 10985 1715997 ~ 1745596 (-) False LOC120571354
XM_039820283.1 mRNA upstream 10985 1715997 ~ 1745585 (-) False LOC120571354
XM_039820293.1 mRNA upstream 10985 1715997 ~ 1729363 (-) False LOC120571354
XM_039820274.1 mRNA upstream 10985 1715997 ~ 1729363 (-) False LOC120571354
TU18155 other downstream 322767 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 506764 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 506802 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 527745 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 726789 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 1276049 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1568664 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1570166 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1571670 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1573160 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile