RNA id: TU18319


Basic Information

Item Value
RNA id TU18319
length 333
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G13775
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2056516 ~ 2056848 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctcctcctctgtctctaacagagtagcagtgtatgtggacgtTCCTGCTGgcattctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcaaccTCTGTATCCTGGGTTTGCGGTCAGGTCTGGtgcctcagtgtctctgtgtcctctgcaggACTGAGAGTCTCTCCTGTGGACAGAAACACTGACTGAAGATCAGCTGCTGAAATCAAAGTTCAGTCTgttcaccatcacacacactatGCACTGTGAAGCAGATCTGAGactcaaacacaaaaacattcatCTGATTTCATCTCTGG

Function

GO:

id name namespace
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641265.1 lncRNA downstream 69108 1986979 ~ 1987408 (-) True LOC120571691
TU18271 lncRNA downstream 193810 1804306 ~ 1862706 (-) True G13734
TU18280 lncRNA downstream 201340 1853232 ~ 1855176 (-) True G13743
TU18275 lncRNA downstream 229566 1821476 ~ 1826950 (-) True G13738
TU18163 lncRNA downstream 235107 1818062 ~ 1821409 (-) True G13656
TU18340 lncRNA upstream 164613 2221461 ~ 2225903 (-) True G13795
TU18384 lncRNA upstream 353293 2410141 ~ 2439620 (-) True G13828
TU18371 lncRNA upstream 365007 2421855 ~ 2439154 (-) True G13817
TU18392 lncRNA upstream 368200 2425048 ~ 2425598 (-) True G13832
TU18393 lncRNA upstream 368200 2425048 ~ 2425413 (-) False G13832
XM_039778640.1 mRNA downstream 1793 2041770 ~ 2054723 (-) True LOC120544691
XM_039778634.1 mRNA downstream 28567 2024856 ~ 2027949 (-) True LOC120544682
XM_039820336.1 mRNA downstream 37370 1994746 ~ 2019146 (-) False LOC120571401
XM_039820351.1 mRNA downstream 37370 1994746 ~ 2019146 (-) True LOC120571401
XM_039820344.1 mRNA downstream 38968 1994746 ~ 2017548 (-) False LOC120571401
XM_039778662.1 mRNA upstream 20832 2077680 ~ 2089309 (-) True LOC120544710
XM_039819966.1 mRNA upstream 913282 2970130 ~ 2972717 (-) True wdr74
XM_039820469.1 mRNA upstream 944305 3001153 ~ 3010061 (-) True ostn
XM_039819385.1 mRNA upstream 999881 3056729 ~ 3228824 (-) True LOC120570817
XM_039820150.1 mRNA upstream 1006582 3063430 ~ 3238792 (-) True LOC120571282
TU18155 other downstream 674795 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 858792 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 858830 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 879773 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 1078817 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 924213 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1216828 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1218330 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1219834 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1221324 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile