RNA id: TU18423



Basic Information


Item Value
RNA id TU18423
length 311
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G13855
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2514174 ~ 2578148 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATTTCAGCAGGAACTCTACTCTTCCCATcaccactctgcggtccagcaccttctccaccacatactcctcttcctccttcactgctgctgcatctgcaggagGTGCTacaggctgctcctcctcctcctcctccttcactgctgctgcaggaggtgctgcaggctgctcctcctcctccttcactgctgctgcagctgcaggaggtgctgcaggctcctcctcctccttcactgctgctgcaggctgctcctcttcctcggCCTTCTTGTCCTTCTTTCCTGCTCCGGTCGCCAGCTTGACGTCTGCTGAG

Function


GO: NA

KEGG:

id description
ko03410 Base excision repair

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18401 lncRNA downstream 39396 2466785 ~ 2474778 (-) True G13840
TU18384 lncRNA downstream 74554 2410141 ~ 2439620 (-) True G13828
TU18371 lncRNA downstream 75020 2421855 ~ 2439154 (-) True G13817
TU18392 lncRNA downstream 88576 2425048 ~ 2425598 (-) True G13832
TU18393 lncRNA downstream 88761 2425048 ~ 2425413 (-) False G13832
TU18445 lncRNA upstream 15635 2593783 ~ 2707359 (-) False G13872
XR_005641286.1 lncRNA upstream 74080 2652228 ~ 2658765 (-) True LOC120571745
TU18466 lncRNA upstream 123677 2701825 ~ 2729893 (-) True G13889
TU18468 lncRNA upstream 124239 2702387 ~ 2748948 (-) True G13890
TU18446 lncRNA upstream 127607 2705755 ~ 2793792 (-) True G13872
XM_039778662.1 mRNA downstream 424865 2077680 ~ 2089309 (-) True LOC120544710
XM_039778640.1 mRNA downstream 459451 2041770 ~ 2054723 (-) True LOC120544691
XM_039778634.1 mRNA downstream 486225 2024856 ~ 2027949 (-) True LOC120544682
XM_039820351.1 mRNA downstream 495028 1994746 ~ 2019146 (-) True LOC120571401
XM_039819966.1 mRNA upstream 391982 2970130 ~ 2972717 (-) True wdr74
XM_039820469.1 mRNA upstream 423005 3001153 ~ 3010061 (-) True ostn
XM_039819385.1 mRNA upstream 478581 3056729 ~ 3228824 (-) True LOC120570817
XM_039820150.1 mRNA upstream 485282 3063430 ~ 3238792 (-) True LOC120571282
XM_039819780.1 mRNA upstream 509316 3087464 ~ 3165911 (-) True LOC120571072
TU18155 other downstream 1132453 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 1316450 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 1316488 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 1337431 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 1536475 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 402913 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 695528 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 697030 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 698534 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 700024 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile