RNA id: XM_039778710.1


Basic Information

Item Value
RNA id XM_039778710.1
length 4865
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC120544739
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2977851 ~ 2996315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCTGCAGACGATGGCGGCGGCACCCCCGTTCAGGATGAGCACCCGGCGTCAGACGGAGAGGAGGACGCCAGGAGCGACGCGGGACGTCAGTCGGAGGACGAGGGCAGCAACGGGCGATTCGCCCGGCGGGGCCGACAGCGACTTCGGAGAGCAGGCCCCcggcgccgccgccgccgctccGCGAGCGACAAAAGCGATTCGGAGGCGGAGGCCCCCCGGCGCGCCGACAGCGACGCCGAGTCCGACTCCTCTCCAGTCAAACGCAGGGTGAGCGCCTCCGAAGACGACGGGGGGTCGCCGCCCGCCAAACGCCGAGAGTCGGACGACGAGGACcaggcggcggcggcggcggcggagTCGCCCGCCGCCAAACGCAGGGGGAGCGGCTCggacatggaggaggaggaggaggagaaaccTAGAGCGGCCGTAGACAGCGACTCGGAGAACGAGGACGCCAAGCCGGCGCCGGCGTCCCCCGGCCGCCGGTCCGACCGCGCCGACAGTGACTCTGAGACGGAGACGCCCGGCAGACGCAAGGCGGCGCCGATAGACTCAGACGGCGAGGAGGAGGCGGAGAAACGGCCGGAGGAggcagaggggggaggaggaggaggaggaggaggggggaagtGGAAGGCTGTGATGCAGTCGGACAGCGaggacgaggaagaggaggccgGGAGGAGGAAGAAGGCTGCGGCGGGAAGCGATGCAGAGCAACCGGAAGAGGCGGGGAAGCAGAAGGTCGACAGCGAGGACGAAGACGAGAAGCCAGGTAGGGACCTCGGCgtaGGACCCAGATGTGGGCGTAGAGTAACCCAGCTGTCCTCTCGTTTGTCCCCCGGAGCAGCCAAGAGGAGCCGGGCGGTGTCGGACGACGGGAACTCGGACAGCGACGACACGGCGGGCTCGCTCGCCCCCGACAAGAGCATGGCGGCCAAGCTGAGAGAGCTGGGCTCGGACAGCGGCAGCGAGGACGACGAGCGCGCCAAGGCCGCCGGCGGCGGCCAGAAGGACGAGAAGGCGCTGTTCGGCAGCGACAGCGAATCGGGCGAaggcgaggaggaggaGAAAATGATCGCCGACATCTTTGGGGAGTCCGGAgacgaagaggaagaggagttcaCGGGTTTCAACCAGGAGGATCTAGAGGGGGACAAGAAGGAGGCGAAGGAGgagcaggagcagcaggagcagtCGGACTCGGACGAAGGGGTCGACCGCAGCGGCCAAGAtaccaGCTTCATGTCCGACTTTGACATCATGCTCGCTAAGAGGAAAGCCATGAACAGCAGGAAACGGCGGCACCGCGACGGAGGGACGTTCATCAGCGACGCCGACGACGTGGTCAGCGCCATGATCAGCAAGATGAACGAAGCCGCGGAGGAGGATCGAACTCTCAACAGTCAGAAGAAACCAGCGCTGAAAAAGCTCACGCTGCTGCCACAGGTCGTCATGCACCTGAAGAagtaagaagtgtgtgttttgtggggaaaaaaagggggggggtcCATTAAAGAGTGGATCAGTCCTCTTCCAGACAAATCGCTGCCGGCGCTCAGAATCCGAGAGGAGCTGCTCAGGATCCTGCAGGAACTGCCCAGTGTGAGCCAGGAGACTCTGAAGCACAGTGGCATCGGACGCTCCGTCATGTTCCTCTACAAACATCCCAAAGAGTCTCGATCCAACAAAGACCTCGCTCTCAAACTTATCAATGAGTGGTCGCGGCCGATATTCGGCTTGACGTCCAACTACAAGGGGATGACGAGAGAGGAGCGCCAGCAGAGAGATCTGGACCAGCAGATGCCTCAGAAACAACGACTCAGttcGGGTGGTCAGACGCCCCGGAGAGACCTGGAGAAACAGCTGACCGGGGAGGAAAAAGCTCTGCGACCCGGAGACCCCGGGTTCTGCGCCAGGGCCCGGGTGCCGATGCCCTCCAACAAAGACTACGTCGTGCGACCCAAATGGAACGTAGAGATGGAGTCCAACAGGAGCGGCTATAAGAAAGGCATCAGCATGGTGGAGAAGCACAAGCGGCGCTTTGCCGAGCAGAGGAAACTGAGCCGCCTGCAGGGAGCTGTCAAGATCAGCATAGAGGGAAACCGGATGCCCCTGCACGGCCAGGTGAAGAAGGGAATGTCCCGCGTTGATAAACAGATGCGTCGAATCGCCGACATCCGGCGCCTGACGAAGCCGGGACACGCTGTTAAAATCAGCGTCGAGGGCAACCGGATGCCCCTCTGATTTTAACCTCCATAGGATTtattcactttattttttttttcccttatttttaatgtgttgttttcctgaacaaaccccctcccctcccccatctTCAGGTCCAGCTCTGCCTTACTGAAGCCTGAGGTCAGAATGTGAACATCTGCTGTAAACTCATCTGGTCTTTGGGCTAAACAACTCAAAATATTACTCCAAAATGATCTGCAGAATAAAAGAGAACTGGCTGCAAACATCAGTAGTAGTTGGGTTAATTTGATCTCAGAATATTAGCTCATGCTGCATTCAGGTACTCCCATGATGGTCCCATTATCCCGAGTTAGGAAGTCCTCCTTCCAACTTGTTGGTGTTGAAGATTAAGTCGTAACGTGGAGAAAAAACATGAACGCTACAAAGatgatgtgttgtgttttattgctcAGAGTTTAAGTTTaactctcctgttgtcctcgggtcacatttgacccattttcaaaaagtttgtgTATCAGAAatctgggtttctttcaaccaaattgtcaaaataaataacgtggatggttccatacaacggtCATCACAACTACAACAAATAATCAattcactactttcattaaatatgaggttttcattcaattttatagcatttgaagtaGAATTGATAAAGAACctcggaaaaaagtgacaaatgtcaaaAAGCGCGGACAAAAATCGACCaggacattggaaaaagtgacgaCAACGTTGAAACAAGTGATTAAAAACACCAGGAAAAGCGACAAGTgtcttacattttaattttaaattttgacccagaaaaacaaaaagttacaagacaacacaagggttaaacaataGCTAGTTTCCAATTTGAAGCTTTATAGTTATTTTCTCCCTAAAGCCACTCGCATATCACTTCACTTGACGTATTAAGTTAATGCTAATAAATAACTTCTCTAACTAATCTAGCTCACTCTACGTAGACGGCTAACTGTTACAACCGGTTACCATTTTACAAATTACACGagcaaaaaaatgtatgtgcaaTTTGTAAACTTAAGTATCTTTCCATTAACTATGGCACCAACTCAGCTAGCAAAAAAGACGCCAACTTTTGGAGTTGTTCCGATATGAGGGGACAATTGCAGGCTTTGTCCCAGTCGGGAACTCATTCTTCTAATAAATTTGACACCACGTGAATGTAGCGTTTATGTTAGCAATGAGCTCCATTTTGCATCATCGCCAAACCAACTGGATCCACAAAGTTAGCTCATGTTAGCGTTACATTAGCTTTACCTCAAGTAAAGTAACGTTAGCGATCGGTTTCATCTCCAAGCCCATAATTGTAGTGGTCACTGGATCCACAATGTTCACTAATGTCAGCACAATGTTAGCTTTACCTCCTAAGTTAAGTAACCatagaagctaatgttagcagtgAGTGGACTTGGAGGTACAACCAACTCtaaggctaatgttagctttacATCTAAGCCAACtaagctagctaatgttagcagtcAGCTACATTAGCTGTATCTCAAAACAAGCCAAATCTTTCGCATTACCTTATACTATCAGTTAGCTATGTTAGTCATCCAAAACTGTCAAGATCCATAACATTTAGCTTACGTTAGCAGTCATTAGCGCTAGCTCTAAAGCAAGCCTGGTCCATAATGTCGGCTAATGTTAGCTCTAAACTAATTTTAGCAGTCAGTTACACGTTCAGCATTATGGACTTAAAGATGAAGCTAAGTTCATAACTTTTGTGGTTAGTAATTGTCTCTAAACCAATTATGTAGCTTAAGTTTGCTACATTAGCTTTAGCTCCAAACAAACTGGATCCCTAATGATGACTTGCAGAAAGCTAACACGGTTCATAATATTAGTAGTTATCTTAACATCCAGGACAACGAAGATAGCTAATGGCAGCAGTCCGCTGTGTTAGCTAGATCTCAAAACaagtaaaatgtacaacttGAGCTTAAATTATCAGTTGGCTACATTTTGTAAGTTTCACATTATGTTAGCGTTAGCACTTTTTTTGCCTAACCTACGGgcagagaatgtctaataaggggagagcttccactctcgggaaaattccgggttagggtacaatggggcttaatagggagtgagatagggagtgaacaggctctccatagacaggctctgcTACGGGTTTCTAAGTTAGCAATCAGCTACATTAGCTTTATCTCTTAAAGTGTAAGCGTGTGTTGCATCAGAGAGAAATCTAACGTGGCTGATCAAAGAATCATTTTGGTgacattttgagtttttttgtccAAAGTACcatcatgtatttttattttttttcttgattagagAATAAAATCGTCCCTCAGGCTCTTTTTTTGTTCTCCTGAATATGAAGGTGTTTGTGTTCTGCTAATCCACTGGCCTCCTCAGTCCCATTTTTGTCCCGTCTCTGTTCCCGTAGCGGCTGTACAGAAGTGTGTAAACTGTCGGCAGGACGGCGTTCACACAGGTAACGCGCGGCGACCCCGACCAGATGTCGGGGTCGGGGGTGTTGACTGTGTGAACCGGCCTTCTTTCTGCACTGTGTTCTGGATCAGGTTTACTTTTCTTAATAAAGACTCGACAGAAACTCA

Function

GO: NA

KEGG:

id description
K17498 SPN1, IWS1; transcription factor SPN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18528 lncRNA upstream 34493 2942958 ~ 2943358 (+) False G13934
TU18524 lncRNA upstream 91471 2886085 ~ 2886380 (+) True G13931
TU18522 lncRNA upstream 93909 2882815 ~ 2883942 (+) True G13930
TU18519 lncRNA upstream 97999 2879393 ~ 2879852 (+) True G13929
TU18499 lncRNA upstream 130795 2846803 ~ 2847056 (+) True G13921
TU18640 lncRNA downstream 136289 3132604 ~ 3166172 (+) True G14017
TU18637 lncRNA downstream 162415 3158730 ~ 3608475 (+) True G14016
TU18642 lncRNA downstream 167955 3164270 ~ 3164611 (+) True G14019
XR_005641300.1 lncRNA downstream 199197 3195512 ~ 3196352 (+) True LOC120571786
XR_005641278.1 lncRNA downstream 547154 3543469 ~ 3548600 (+) True LOC120571720
XM_039778694.1 mRNA upstream 13079 2948634 ~ 2964772 (+) True zgc:162872
XM_039820177.1 mRNA upstream 37128 2934777 ~ 2940723 (+) True LOC120571294
XM_039819364.1 mRNA upstream 43147 2889027 ~ 2934704 (+) False LOC120570793
XM_039819927.1 mRNA downstream 38494 3034809 ~ 3044150 (+) True gmnc
XM_039819937.1 mRNA downstream 38494 3034809 ~ 3044150 (+) False gmnc
XM_039820116.1 mRNA downstream 299116 3295431 ~ 3298504 (+) True LOC120571257
XM_039778718.1 mRNA downstream 301666 3297981 ~ 3299896 (+) True LOC120544755
XM_039778719.1 mRNA downstream 303601 3299916 ~ 3302462 (+) True LOC120544772
TU18527 other upstream 17592 2948804 ~ 2960259 (+) False zgc:162872
TU18043 other upstream 239663 2726319 ~ 2738188 (+) True G13555
XR_005641197.1 other upstream 351558 2610872 ~ 2626293 (+) False LOC120571130
TU17835 other upstream 1418188 1551864 ~ 1559663 (+) True G13390
TU17665 other upstream 1696258 1182382 ~ 1281593 (+) True G13262
XR_005638531.1 other downstream 276664 3272979 ~ 3273169 (+) True LOC120554600
XR_005638540.1 other downstream 278162 3274477 ~ 3274667 (+) True LOC120554633
XR_005638533.1 other downstream 279665 3275980 ~ 3276171 (+) True LOC120554604
XR_005638529.1 other downstream 281165 3277480 ~ 3277670 (+) True LOC120554596
XR_005638543.1 other downstream 282660 3278975 ~ 3279162 (+) True LOC120554647

Expression Profile