RNA id: TU18798


Basic Information

Item Value
RNA id TU18798
length 3660
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G14148
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4019244 ~ 4055085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGATTTGATtcgttttattgtcatttaaaGCTGATTTATGTACAGAAAGATTCATTTCATACGTTTACAGGAGACAGAGAATAaccagagtgtgtgtgcatggtggTTGAGTGGGGAACTGcgctcttattttgaaagaaCAGGAAGTGTTACAATGCTGGTGAGTCTGGTTTTACACTTTGTgatttaaatatgaaatatgacaTTTTCACATGTCAGTGTCCCAAAAAcatgaaaactaaacttttaaCTGggagaaaaatacacacagagacacacacacacacacacacagacacagcacacacacgcacagacacacacaaacagacacacacaaacagacacagacacacaaaaacacacacacacacacacacaaacagacacagacccaaacacacacacacacacacacacacacacacacacacaaacaatcacacacacacacacacacacacacacacacacacacacacacacacacacaaacagacacagacacacacaaaaacacacacacacacacacacacacacacacagacacacacacacaaacagactcagacacacacacacacaccaagatcGTCAATAATCACTTAAAAACTGAAGCAGGTAATCATCACATGTGATGTTATTTGTAGTTCACGAATTAAATCGTGCAAAAAAATTAAACGTGGAAGAGAAGAAACGAGAATAAAacctttaaattatatttaaactCAGTCTGACGTTGTGTCACCAGAGGGCGTCCTCTCCTTCTGATTctctacacatttaaaacacctTAATCAGCAAATATTATGCAGTACAAGTATCATTTTAACACCAACATATAAGTACTATTCATCTCTGTATATGACACAAATATAATAAACTTTAAATCACGGCTTTAAATACTCTGTCCCTCAGATCATCGTCGTCTATATATACACATCTATATATCTGTAGTACCTTTGATTAAAATGTGTCTTTTCTTTAACCATGTGCAacaataaagatataaaacgctccagtttttttcaacctggaccctattttctcatgtttttgtgtagaagtgactgatgggaacaacagtctgTGAAATTATAGAGagagacctttttaaaaacctgtttaagacctttctgtttaaccagaaacagctctgaggtcactagctctaaacccaccagactccatgtaaataatcaggacttttagcgtgtgtagagccaacatatttttacatgtaaatcagtaaactatgtgtttatttcaacctcaactagagttgtgatggatggaaaagtggaaaagacgacccaaaaactgcttttcatagttttattttgtttctatcGACTGTggatgaagtgtgttttacggtGCTTAAATcaatgattatttacatggagtctggtgggtttagcgaacgacATTtagcggatgtttttatgtttacaaAAAGGATCtcactctttaactaaaagctctatctctgtagggatcctttccataatgttatcAGACACTGAGAATAACAATCTGAGTCAGTCAGCGGCATAAAAAGCACTtgttgtgaaggtaaatacaagctgcacaattgcccgATATTACTGATTAACCCAGATTACAGCGAGACATCTTCAGGTTCCAGTTTATTGATCCAGACTCTGCAGGagtccacccccccccccaccctcgtCTGTTCTGCTCTTTGTCCCAGAATGCATTTCAGTTCAGAGGTTTGTCTTTTATTGATCCTCTACGAGGCGTCTTCCAGCTCAAAGTCCAGACGTCCTGCAGGACACCGAGGCTGAGTGAAGCATTCGTACATGTAGCTGTGTAAAGTAAAGCTCTGGACTGGTTATTTATTACTGACTGCTACTGTGTGAGAGTGAAAACACAACGGGGCTCATCACGCGCCTGGTcacccttctcctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctgcctgagagaaagagagaggatgagtggggaaaactgtggtaattgtagcttgtgtgtgtatgtgtgtgggtgtgtggtagagcgagtgagagagtgacagtgatTATCTTCCGAGCTTTCTCTGTAGCGTACGTAaatggcctgaagtttatacttgtgcgttggtgtgtgcgtcaggccagcatgtgtgtgtgtgtgtgtgtgtgtgtgtctatgtgtgtctgtgtgtgtgagtgagtattTTGCGAGAGGTGACATCAGGCCACGGTGTAGATTTAACGCTGAAGCACGAATCGCGCTTAAATTGGCCGTCCTACAACGGTGCGTCCcgtacagacgctaaagggggaTTTCTGCGTTGGTATCTGACACTTTTAGAGTAGTtcctcctccacagagctgcggaggaaggtctggctagtccacacagcattcctgaaTGGGAGAACAACATGCTCTGTGTTTATCGGCATTTaaactttaaaccaatcacagtcgtcgtggggcggggctaagctccgagCAGAGCctcggtgcctctgctaaatagtctcaggaaggaactggttttggtgaaacatgtggacgttcagaaGTAGTTTAAAGCCCCTGACGCACCGAGCCGATAATCAACCGTTGGACAGTCAGTCTAatattttaaactgacctttgtggatctgagatgaagacagattcagcaactgcatcacGGCCGATtactctcttaaaatgttttcagaaacacctttcggtgaactattttagtacaatatgagatatcgtattctgaacgagccgccatgacagtctggctttgaatttcccggagaaaccagacccacgtgacgcgttccgtccaatcagctgccggttttcatgtTTTGGGCGActatacagattagcgccgcctgctgctatggagacgtattacgtctcgtctcttcggtgagttctgaggaactttttggacaAATTGGAGACCGATCAGTCCGattgccgagggtcggccgtctgctCGGTGTGTGTGGGGcctttagtcgtgcaacagaaaactcagattggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcagttaaccatagtcctcaccaatcagccggaggttagaacgccaacacagagacagaggaagggggacGGGACAGATCTGGTGTAATTTCAGGCAGCACCAGAGAAATCCTGGAAGTGTGATGTCATGTAGACTAGACGCTGAGAGACACGGGGACCGGGCGCCAGTGTCGTTGGGAGCGAGAAGCGTTTGTGCGTTCAGAGAACGTCGTCGGCGTTCTCCTGGACGGGCGTCCTGGCTTTGCGCGGGCGCGGCCGCAGCGAGGTGAAGCAGGAGGAGGCGGTCAGGGCGATGCGGCTCAGACCCACGTTGAGGCAGTGGACCTCGGAGGTCACGGGGACCTCGGAGAAGAGGGCGCGGTCGCGGGTCAGCCGGGCCGAGCCGACGCCGCCGGCGGCGGAGGGGGAGGAAACCTCGCTGCTCTCGATGTCTTTGACGATGTTGAGGATCTCCTGGCGCTCCGCCTGGCGAGTCGTCCCTCGGATGTTCAGGATAGCCGACACGTGCTTcttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18809 lncRNA upstream 14147 4028609 ~ 4034627 (+) False G14152
TU18810 lncRNA upstream 14147 4028609 ~ 4034627 (+) True G14152
TU18815 lncRNA upstream 14147 4028609 ~ 4034627 (+) False G14152
TU18811 lncRNA upstream 18572 4028609 ~ 4030202 (+) False G14152
TU18782 lncRNA upstream 28859 3925235 ~ 4019915 (+) True G14141
TU18822 lncRNA downstream 4821 4057794 ~ 4058302 (+) True G14159
TU18832 lncRNA downstream 24825 4077798 ~ 4122053 (+) False G14162
TU18829 lncRNA downstream 40290 4093263 ~ 4122053 (+) False G14162
TU18831 lncRNA downstream 49559 4102532 ~ 4122053 (+) False G14162
TU18828 lncRNA downstream 54432 4107405 ~ 4122053 (+) False G14162
XM_039820162.1 mRNA upstream 505569 3537939 ~ 3543205 (+) True LOC120571287
XM_039778719.1 mRNA upstream 746312 3299916 ~ 3302462 (+) True LOC120544772
XM_039778718.1 mRNA upstream 748878 3297981 ~ 3299896 (+) True LOC120544755
XM_039820116.1 mRNA upstream 750270 3295431 ~ 3298504 (+) True LOC120571257
XM_039819937.1 mRNA upstream 1004624 3034809 ~ 3044150 (+) False gmnc
XM_039778795.1 mRNA downstream 97609 4150582 ~ 4154516 (+) True LOC120544917
XM_039820076.1 mRNA downstream 132933 4185906 ~ 4199356 (+) True LOC120571237
XM_039820085.1 mRNA downstream 132933 4185906 ~ 4199356 (+) False LOC120571237
XM_039820095.1 mRNA downstream 132933 4185906 ~ 4199356 (+) False LOC120571237
XM_039820104.1 mRNA downstream 132933 4185906 ~ 4199356 (+) False LOC120571237
XR_005638374.1 other upstream 700852 3347816 ~ 3347922 (+) True LOC120554338
XR_005638523.1 other upstream 740302 3308282 ~ 3308472 (+) True LOC120554582
XR_005638542.1 other upstream 741791 3306793 ~ 3306983 (+) True LOC120554643
XR_005638519.1 other upstream 743290 3305294 ~ 3305484 (+) True LOC120554577
XR_005638520.1 other upstream 754105 3294479 ~ 3294669 (+) True LOC120554580
TU18913 other downstream 310693 4363666 ~ 4372769 (+) False LOC120570718
TU18980 other downstream 314630 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other downstream 316100 4369073 ~ 4399043 (+) False LOC120570718
TU18942 other downstream 447200 4500173 ~ 4527377 (+) True G14209
TU18878 other downstream 1034851 5087824 ~ 5088672 (+) False G14187

Expression Profile