RNA id: TU18873


Basic Information

Item Value
RNA id TU18873
length 1145
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G14187
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4801340 ~ 5417135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcctcctttcagggtggagcctgctggagtcagatgtTTGACACCAGGTCCATGGAGatattcctgtgaactcacactggacacaaacacagtgcacagaaacctcaaactgtctgacaacaacaggaaggtgacattaGTGGAGGAGGATCagtcatatcctgatcatccagagaggtttgagtcctggcctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggtggagacgAGAGGAAGGGTtgatatatcagtgagttacagaggaatcaggaggagaggagacagtcttgactgtttgtttggatataatgatcagtcctggagtctgatctGTTCTGATGGTCGTTACTCTGTCTGTCACAATAACAGAACaacatccatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcagcctctctatccTGGGTTCTGGTTCAGGTCTCCTGGTGACTCAGTGTCTCTGAGTCCTGTGTAGGAcggagagtctcctcctgtttctcacagctgatcagttgagtctgtacCGCCGGGGTcgtcaactacattttttcaagggccagttcactgaggagtgatggttaaagtctgtcgttatggaaacattattatagtatgcagcgtcctgattggtggaaaatgcttgcagaaagaaacggctgttgtcaggtaaacatgtcactgtccaagaggtggaaaagcccagctttaatggtgAATATTTCAGGATATTGTTAGgaactaatgaatgaactttgtatgaaataattcagaatgattgaacagattcctggtgaacattgtaaagttgttccacttcctgtcctttaaagatggaagctgtgatcatgaaattgtagaaatgccgttgacttgtgtcatgtttagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19107 lncRNA upstream 19432 5338329 ~ 5396436 (+) True G14336
XR_005638153.1 lncRNA upstream 29563 5383630 ~ 5386305 (+) True LOC120553302
XR_005638154.1 lncRNA upstream 29563 5383630 ~ 5386305 (+) False LOC120553302
TU19113 lncRNA upstream 29563 5383631 ~ 5386305 (+) False LOC120553302
TU19035 lncRNA upstream 65796 4782335 ~ 5350072 (+) True G14282
TU19130 lncRNA downstream 96666 5513801 ~ 5528619 (+) False G14344
TU19158 lncRNA downstream 114169 5531304 ~ 5532129 (+) True G14359
TU19151 lncRNA downstream 131820 5548955 ~ 5559454 (+) True G14353
TU19171 lncRNA downstream 206541 5623676 ~ 5633716 (+) True G14372
TU19176 lncRNA downstream 218509 5635644 ~ 5636188 (+) True G14376
XM_039819884.1 mRNA upstream 185423 5219650 ~ 5230445 (+) False LOC120571154
XM_039821261.1 mRNA downstream 30011 5447146 ~ 5461510 (+) True LOC120572059
XM_039785768.1 mRNA downstream 126156 5543291 ~ 5547333 (+) True LOC120549121
XM_039785737.1 mRNA downstream 224519 5641654 ~ 5711859 (+) True col4a3
XM_039786321.1 mRNA downstream 299135 5716270 ~ 5720289 (+) True sst1.2
XM_039785093.1 mRNA downstream 321003 5738138 ~ 5743105 (+) True sst1.1
TU18878 other upstream 327196 5087824 ~ 5088672 (+) False G14187
TU18942 other upstream 888491 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 995046 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other upstream 1016825 4369073 ~ 4399043 (+) False LOC120570718
TU18913 other upstream 1043099 4363666 ~ 4372769 (+) False LOC120570718
TU19140 other downstream 93622 5510757 ~ 5521881 (+) True G14344
TU19135 other downstream 96666 5513801 ~ 5518149 (+) False G14344
TU19963 other downstream 990908 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 997452 6414587 ~ 6416070 (+) False spcs2
TU19934 other downstream 997452 6414587 ~ 6415544 (+) False spcs2

Expression Profile