RNA id: TU18919


Basic Information

Item Value
RNA id TU18919
length 470
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC120571647
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4237571 ~ 4852575 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGTTAGTGTCTCAGCTTTTTCTCTCGGTGTGGAGCTCCAGCTGAAGgacccatcagagaccaaaccctgctgaacctgaacctgaacctgaacctgaacctgaacccagctgtgggTCCATGAAGAGTCACCGGTCCATGGAGCCACCACTACTTTAAGAAAAGACCTGTAAGGGAGAGGAGAATAGAAATGGAGGAGAGGCTACTTgaaatggaggagagaggatTGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAACAATGGAAAGGGAAATTGAAATGTTAAGAAGAAGATTGAGGTGAGTTGTGAACATCCAGCAAACTGGAACGAGTCTCATTGGATGGAACTACGTCCCGTCTGGGTTGTTTTGTGTCATTATTGTAGTTGATGACTGAAATGAGAATAGTTTTGCAAAATAATTTCCTGTTTCACTCAAAATATCTGCCTTTTGgacaacattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641291.1 lncRNA upstream 75278 4154666 ~ 4162299 (+) True LOC120571758
TU18842 lncRNA upstream 90834 4146317 ~ 4146743 (+) True G14172
TU18841 lncRNA upstream 94274 4143087 ~ 4143303 (+) True G14171
TU18838 lncRNA upstream 103922 4133199 ~ 4133655 (+) True G14168
TU18828 lncRNA upstream 115524 4107405 ~ 4122053 (+) False G14162
TU18920 lncRNA downstream 7157 4246442 ~ 4252134 (+) False LOC120571647
TU18964 lncRNA downstream 26381 4265666 ~ 4266169 (+) True G14231
TU18950 lncRNA downstream 92234 4331519 ~ 4332125 (+) True G14217
TU18972 lncRNA downstream 93001 4332286 ~ 4332573 (+) True G14239
TU18973 lncRNA downstream 93606 4332891 ~ 4333421 (+) True G14240
XM_039778846.1 mRNA upstream 12260 4223592 ~ 4225317 (+) True LOC120544944
XM_039820076.1 mRNA upstream 38221 4185906 ~ 4199356 (+) True LOC120571237
XM_039820085.1 mRNA upstream 38221 4185906 ~ 4199356 (+) False LOC120571237
XM_039820095.1 mRNA upstream 38221 4185906 ~ 4199356 (+) False LOC120571237
XM_039820104.1 mRNA upstream 38221 4185906 ~ 4199356 (+) False LOC120571237
XM_039819208.1 mRNA downstream 129784 4369069 ~ 4449830 (+) True LOC120570718
XM_039819633.1 mRNA downstream 682802 4922087 ~ 5063976 (+) True LOC120570934
XM_039820381.1 mRNA downstream 926926 5166211 ~ 5173445 (+) True LOC120571428
XM_039820373.1 mRNA downstream 926926 5166211 ~ 5173445 (+) False LOC120571428
XM_039819884.1 mRNA downstream 980365 5219650 ~ 5230445 (+) False LOC120571154
TU18797 other upstream 182492 4048774 ~ 4055085 (+) False G14148
XR_005638374.1 other upstream 889655 3347816 ~ 3347922 (+) True LOC120554338
XR_005638523.1 other upstream 929105 3308282 ~ 3308472 (+) True LOC120554582
XR_005638542.1 other upstream 930594 3306793 ~ 3306983 (+) True LOC120554643
XR_005638519.1 other upstream 932093 3305294 ~ 3305484 (+) True LOC120554577
TU18913 other downstream 124381 4363666 ~ 4372769 (+) False LOC120570718
TU18980 other downstream 128318 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other downstream 129788 4369073 ~ 4399043 (+) False LOC120570718
TU18942 other downstream 260888 4500173 ~ 4527377 (+) True G14209
TU18878 other downstream 848539 5087824 ~ 5088672 (+) False G14187

Expression Profile