RNA id: TU18979


Basic Information

Item Value
RNA id TU18979
length 2218
lncRNA type read_through
GC content 0.51
exon number 2
gene id G14246
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4367603 ~ 4420822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacagacacacacacacaaacacacacacacacacagacacacagacacacacacacacacagacacacacacacacacacacagacacgcacacacacacacagacacacacacacacacggacacacacacacacacacaccccagacacagacgcgcacacacacagacacagacacacacacacacacacacacacacgtacacacagacacagacacacgcacacacacagacacacacacacacacagacacactcacgcacacacagacacacacacgcacacacagagacacacgcacacacacatgcacacacacacaaacacaggcacacacacacacaaacacaggcacacacacacacaccccgcgCTTGGTGATGTAATCAGTGTGTTGTTCCTCGGAGCtccgtgacctttgacctctctctgttttgttttaactTCAGTGTTTATGTTGCTGCTCTGCTTTGTTCTAATGATGATTTCTTTATGCAGTGTTGATTTGATGAGTTAACCCTTCAGATGGCAGCTCCTCCCCGCCTGGAAAGGTTTAACATGTTTTAgggtctaagtgactgatgggaacaacaatcttcaGCCcagaaatcaccatcaccaaacccaccagactccatgtaaataatcaggacttttatcatcgtaaaacacacttcattcaaagtggacagaaactaaataaaactaccaaaagccgtcttggttcatctttccactgttccaacaatcaccactctggtttggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggaaacatgctggctctatacacactaaaagtcccgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatgttctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctgatggGTAAAGTGTTCTCTGCTCCATTAACATTGTAAACAGTTTTGAAGGTAATTCATGTAAAAACATGCACATAACAATTGCATCTTCCTCTCAAGGGGGGCACTAAAGTCTAATCCTGTAGGTAATATTTAAGTAGTAATGTCTCACGGCCACCGGGGGGAGCTGTCGTCTGAATCCCGAAAGGCGACGGAAAttctgaaaaaagcaacaaaaacatctaaaaacGTGACGAAAACCTTAAAACAGGAACAAAAACTTCTACAAAGCCCCCCATAAATCCTGCCTATGTGTACTTAGTGTTCTCTCCACGTTAGTTATCTGGACATTAGGGCTCAACCATGTGGGGAAAACTTCTAATTGTGATTTTTCTGCCAAGttagtctctggtctcttcagggttagtttctggctctgtgATGGTAAATCtaatgtttctacttcacttcttatttcctgagcACGTGTGAAggactcttgtgttgaagatcAGAAagctgtctgcagcagttagtgtTGGTCGGTCTATTCACTGACAGGACTGATGTGGAGAcaacatgactcagctcttttattctctaactaaatctactaatatggaGCTGAGTCACTATGAGCTGGTCCTCCTCCAACAGGAACTAGAGTCCAATCCTAATCAGGACCCTCTACAGTTATAGGAGGTGGAGACCACTCTCAGCTATCATTTGGTGCCACAGTGGAGAGAACAAACTTCTGACGTCTAAATTCCTGCATTCAGATATATTAGTATGCATGAATTTATGTTACAAAATGTTGTAGGTTTCCCCAGAATGAAGCCGTAGCTCGACGCTCTTCTAAATCTCCTCGTCTTAATCCACATTAAAAAATCCACAGGACCACACGGTAAAAGTTTAACTATTTACTTTTACACAAGAAAGAATAGACCTCTGAACTACACTCagtctatatggttcattcagAATATCCATCTTATtatcttataatatattctgttaatacacggCATCtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18973 lncRNA upstream 34182 4332891 ~ 4333421 (+) True G14240
TU18972 lncRNA upstream 35030 4332286 ~ 4332573 (+) True G14239
TU18950 lncRNA upstream 35478 4331519 ~ 4332125 (+) True G14217
TU18964 lncRNA upstream 101434 4265666 ~ 4266169 (+) True G14231
TU18920 lncRNA upstream 115469 4246442 ~ 4252134 (+) False LOC120571647
TU18985 lncRNA downstream 13617 4416531 ~ 4416885 (+) True G14251
TU18898 lncRNA downstream 53808 4456722 ~ 4475629 (+) False G14188
TU18901 lncRNA downstream 53808 4456722 ~ 4475629 (+) False G14188
TU18994 lncRNA downstream 68353 4471267 ~ 4476223 (+) False G14256
TU18995 lncRNA downstream 74623 4477537 ~ 4477913 (+) True G14257
XM_039778846.1 mRNA upstream 142286 4223592 ~ 4225317 (+) True LOC120544944
XM_039820076.1 mRNA upstream 168247 4185906 ~ 4199356 (+) True LOC120571237
XM_039819633.1 mRNA downstream 519173 4922087 ~ 5063976 (+) True LOC120570934
XM_039820381.1 mRNA downstream 763297 5166211 ~ 5173445 (+) True LOC120571428
XM_039820373.1 mRNA downstream 763297 5166211 ~ 5173445 (+) False LOC120571428
XM_039819884.1 mRNA downstream 816736 5219650 ~ 5230445 (+) False LOC120571154
XM_039819901.1 mRNA downstream 816736 5219650 ~ 5230445 (+) False LOC120571154
TU18797 other upstream 312518 4048774 ~ 4055085 (+) False G14148
XR_005638374.1 other upstream 1019681 3347816 ~ 3347922 (+) True LOC120554338
XR_005638523.1 other upstream 1059131 3308282 ~ 3308472 (+) True LOC120554582
XR_005638542.1 other upstream 1060620 3306793 ~ 3306983 (+) True LOC120554643
XR_005638519.1 other upstream 1062119 3305294 ~ 3305484 (+) True LOC120554577
TU18942 other downstream 97259 4500173 ~ 4527377 (+) True G14209
TU18878 other downstream 684910 5087824 ~ 5088672 (+) False G14187
TU19140 other downstream 1107843 5510757 ~ 5521881 (+) True G14344
TU19135 other downstream 1110887 5513801 ~ 5518149 (+) False G14344
TU19963 other downstream 2005129 6408043 ~ 6413375 (+) False spcs2

Expression Profile