RNA id: TU18985


Basic Information

Item Value
RNA id TU18985
length 219
lncRNA type read_through
GC content 0.53
exon number 2
gene id G14251
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4416531 ~ 4416885 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCCTCTGTCCTACAGGTTATAAATAATCACATCATAATGAAACTAGTTGCCAACCAGACGTTACCAACGGTGACATTTAAAGCTCCGTTGTGTGAGAacttctcccatctagcggtgagaTTGTAGAtgacaaccagctgaatatgaggtgagattgtagataacaaccagctgaatatgaggtgagattgtagataacaaccagctgaatatgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18979 lncRNA upstream 13617 4367603 ~ 4402914 (+) True G14246
TU18953 lncRNA upstream 29848 4379216 ~ 4386683 (+) False LOC120570718
TU18943 lncRNA upstream 38858 4367124 ~ 4377673 (+) True G14210
TU18973 lncRNA upstream 83110 4332891 ~ 4333421 (+) True G14240
TU18972 lncRNA upstream 83958 4332286 ~ 4332573 (+) True G14239
TU18898 lncRNA downstream 39837 4456722 ~ 4475629 (+) False G14188
TU18901 lncRNA downstream 39837 4456722 ~ 4475629 (+) False G14188
TU18994 lncRNA downstream 54382 4471267 ~ 4476223 (+) False G14256
TU18995 lncRNA downstream 60652 4477537 ~ 4477913 (+) True G14257
TU18940 lncRNA downstream 76997 4493882 ~ 4496518 (+) True G14207
XM_039778846.1 mRNA upstream 191214 4223592 ~ 4225317 (+) True LOC120544944
XM_039820076.1 mRNA upstream 217175 4185906 ~ 4199356 (+) True LOC120571237
XM_039819633.1 mRNA downstream 505202 4922087 ~ 5063976 (+) True LOC120570934
XM_039820381.1 mRNA downstream 749326 5166211 ~ 5173445 (+) True LOC120571428
XM_039820373.1 mRNA downstream 749326 5166211 ~ 5173445 (+) False LOC120571428
XM_039819884.1 mRNA downstream 802765 5219650 ~ 5230445 (+) False LOC120571154
XM_039819901.1 mRNA downstream 802765 5219650 ~ 5230445 (+) False LOC120571154
XR_005641110.1 other upstream 17488 4369073 ~ 4399043 (+) False LOC120570718
TU18913 other upstream 43762 4363666 ~ 4372769 (+) False LOC120570718
TU18797 other upstream 361446 4048774 ~ 4055085 (+) False G14148
XR_005638374.1 other upstream 1068609 3347816 ~ 3347922 (+) True LOC120554338
XR_005638523.1 other upstream 1108059 3308282 ~ 3308472 (+) True LOC120554582
TU18942 other downstream 83288 4500173 ~ 4527377 (+) True G14209
TU18878 other downstream 670939 5087824 ~ 5088672 (+) False G14187
TU19140 other downstream 1093872 5510757 ~ 5521881 (+) True G14344
TU19135 other downstream 1096916 5513801 ~ 5518149 (+) False G14344
TU19963 other downstream 1991158 6408043 ~ 6413375 (+) False spcs2

Expression Profile