RNA id: TU19054


Basic Information

Item Value
RNA id TU19054
length 912
lncRNA type intronic
GC content 0.47
exon number 4
gene id G14298
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4950325 ~ 4972335 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tacctgtgtgagtgtgtgtctgtgtgtgtcggtgtgtgtgtgtgtatcgtacctgtgtgagtgtgtgtctgtgtgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtctgtgtgtatcgtacctatgtgagtgtgtgtgtgtgtatgtgtgtgtctgtgtgtattgtacctgtgtgagtgtgcgtctgtgtgtgtgtgtgtgtgtgtgtatcgtaactgtgtgagtgcatgtgtgtgtgtctgtgtgtatctgtttgtgtgtctgtgtctatgtgtgtctgtctttatgtgtgtgtctgtatctgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtatcgtacctgtctgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtatctgtgatgtgtgtgcgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtcgtacctgtgtgtgtctgtgtgtgtgtgtgtgcctgtgtgtgtttgtgtgtctgcgtgaatttgtgtgtctgactgtgtgtacgtgttagtgtgtctgtgtgaatctgtgtgtttgcctgtgtgtgtgtgtgttagtgtgtctgtgtgaatctgtgtgtctgactgtgtgtgtttgcctgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtcgctgtctgtgtttgtgtgtatctgtgtgtatctgtgatgtgtgtgtgtgtttctgtgtgtgcgtgtgtgcgtgcgtgcgtgagtgtgtgtatcgtacctgtgtgtgtctgtgtgtgtgtctttgtgtgtctgtgtgtgttagtgtgtctgtgtgaatctgtgtgtctgactttgtgtatgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0031214 biomineral tissue development biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 12459 4870034 ~ 4937866 (+) False G14187
TU19045 lncRNA upstream 14442 4866214 ~ 4935883 (+) True G14289
TU18946 lncRNA upstream 15911 4893869 ~ 4934414 (+) True G14213
TU19046 lncRNA upstream 18746 4877994 ~ 4931579 (+) True G14290
TU18889 lncRNA upstream 24874 4923823 ~ 4925451 (+) False G14187
TU18872 lncRNA downstream 15115 4987450 ~ 5127917 (+) False G14187
TU18887 lncRNA downstream 42508 5014843 ~ 5127917 (+) False G14187
TU18888 lncRNA downstream 42508 5014843 ~ 5037417 (+) False G14187
TU18897 lncRNA downstream 42508 5014843 ~ 5155908 (+) False G14187
TU18861 lncRNA downstream 64478 5036813 ~ 5111622 (+) False G14187
XM_039820708.1 mRNA upstream 97750 4237571 ~ 4852575 (+) True LOC120571647
XM_039819208.1 mRNA upstream 500495 4369069 ~ 4449830 (+) True LOC120570718
XM_039778846.1 mRNA upstream 725008 4223592 ~ 4225317 (+) True LOC120544944
XM_039820085.1 mRNA upstream 750969 4185906 ~ 4199356 (+) False LOC120571237
XM_039820381.1 mRNA downstream 193876 5166211 ~ 5173445 (+) True LOC120571428
XM_039820373.1 mRNA downstream 193876 5166211 ~ 5173445 (+) False LOC120571428
XM_039819884.1 mRNA downstream 247315 5219650 ~ 5230445 (+) False LOC120571154
XM_039819901.1 mRNA downstream 247315 5219650 ~ 5230445 (+) False LOC120571154
XM_039819910.1 mRNA downstream 247320 5219655 ~ 5230445 (+) False LOC120571154
TU18942 other upstream 422948 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 529503 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other upstream 551282 4369073 ~ 4399043 (+) False LOC120570718
TU18913 other upstream 577556 4363666 ~ 4372769 (+) False LOC120570718
TU18797 other upstream 895240 4048774 ~ 4055085 (+) False G14148
TU18878 other downstream 115489 5087824 ~ 5088672 (+) False G14187
TU19140 other downstream 538422 5510757 ~ 5521881 (+) True G14344
TU19135 other downstream 541466 5513801 ~ 5518149 (+) False G14344
TU19963 other downstream 1435708 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 1442252 6414587 ~ 6416070 (+) False spcs2

Expression Profile