RNA id: TU19078


Basic Information

Item Value
RNA id TU19078
length 1443
lncRNA type sense_over
GC content 0.47
exon number 3
gene id G14317
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5213191 ~ 5306999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtgaaagacccaggaggaagcggaggaacaagtccaggtgtccatttggactctgtaaggccttgtccacagcactctggtagaacTGTGTTGATTTGTCTCTGAACACTTCAGACCACCACAATGTTGTTTGTTCttctgacagcaggttgactccagagttgatgaatgtctgatggacatgaagagcagccagaaactcctgaacactcagatggacgaagcagaacaccttgtcctggtacagtcctctctcctctttaaagatctgtgtgaacagtCCTGAGTACACTGACGCTGATCTGATATtgatgccacactctgtcaggtctgattcatagaagatcaggttgcctttctgcagctgctcaaaagccagttttcccagagacttGATCATCTTCCTGCTCTCTAAACTCCAGTGTTGATCTGTCTCAGATTCTCCATCATACCTGATGTTCTtcactttggactgaaccaccaggaagtggatgtacatctcagtcagggtcttgggcagctctcctccccctctagtcttcaacacgtcctccagaactgtagcagtgatccagcagaagactgggatgtggcacatgatgtggaggcttcgtgatgtcttgatgtgggagatgattctgctttCCTGCTTCTTgtctctgaatctcttccttaagtactcctccttctgtgggtcagtgaaccctctgatCTCTGTCACTATGTCAACACacccaggagggatctgattggctgcagcaggtcgtgtggttatccagagtcgagcagagggaagcagtttccccctgatgaggtttgtcagcagcacacccactgaggtggactctgtaacatcagtcaggatctcagtgttgtggaagtccagaggaagtcggcactcatccagaccgtcaaagatgaacacaacttGGAACtgttcaaacctgcagattcctgcttcttcggtttcactaaagaagtgATGAACAAGTTCAACAAAGCtgtattttttctctttcagcacgttcagctctctgaaagtgaatggaaatgtaaactggatgtcctggttggctttgccttcagcccagtccagagtgaatttctgtgttaagactgttttcccgatgccagccactcccgttgtcatcactgttctgattggttcatctcttccaggtggggttttaaagatgtcttcttgtctgattgttgtttctggtctgtctgatTTCCTgaatgctgtttcaatctgtctgacctcatgttcatcattgacctctgcagtccctccctccatgatgtagatctctgtgaacatctgattcagaagggttgggtttcctgctttagcaatcccctcaaacacacactggaacttcttGTTTAGGTTAGATTTGAGTTTACGTTTACAAACTCCAGCAGAACTTCCTGAATGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19076 lncRNA upstream 3579 5208350 ~ 5209612 (+) True G14316
TU18944 lncRNA upstream 53501 5125817 ~ 5159690 (+) True G14211
TU18897 lncRNA upstream 57283 5014843 ~ 5155908 (+) False G14187
TU19069 lncRNA upstream 67958 5075659 ~ 5145233 (+) True G14310
TU18872 lncRNA upstream 85274 4987450 ~ 5127917 (+) False G14187
TU19107 lncRNA downstream 31330 5338329 ~ 5396436 (+) True G14336
TU19108 lncRNA downstream 31330 5338329 ~ 5339895 (+) False G14336
XR_005638153.1 lncRNA downstream 76631 5383630 ~ 5386305 (+) True LOC120553302
XR_005638154.1 lncRNA downstream 76631 5383630 ~ 5386305 (+) False LOC120553302
TU19113 lncRNA downstream 76632 5383631 ~ 5386305 (+) False LOC120553302
XM_039820381.1 mRNA upstream 39746 5166211 ~ 5173445 (+) True LOC120571428
XM_039820373.1 mRNA upstream 39746 5166211 ~ 5173445 (+) False LOC120571428
XM_039819633.1 mRNA upstream 149215 4922087 ~ 5063976 (+) True LOC120570934
XM_039820708.1 mRNA upstream 360616 4237571 ~ 4852575 (+) True LOC120571647
XM_039821261.1 mRNA downstream 140147 5447146 ~ 5461510 (+) True LOC120572059
XM_039785768.1 mRNA downstream 236292 5543291 ~ 5547333 (+) True LOC120549121
XM_039785737.1 mRNA downstream 334655 5641654 ~ 5711859 (+) True col4a3
XM_039786321.1 mRNA downstream 409271 5716270 ~ 5720289 (+) True sst1.2
XM_039785093.1 mRNA downstream 431139 5738138 ~ 5743105 (+) True sst1.1
TU18878 other upstream 124519 5087824 ~ 5088672 (+) False G14187
TU18942 other upstream 685814 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 792369 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other upstream 814148 4369073 ~ 4399043 (+) False LOC120570718
TU18913 other upstream 840422 4363666 ~ 4372769 (+) False LOC120570718
TU19140 other downstream 203758 5510757 ~ 5521881 (+) True G14344
TU19135 other downstream 206802 5513801 ~ 5518149 (+) False G14344
TU19963 other downstream 1101044 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 1107588 6414587 ~ 6416070 (+) False spcs2
TU19934 other downstream 1107588 6414587 ~ 6415544 (+) False spcs2

Expression Profile