RNA id: XR_005638153.1


Basic Information

Item Value
RNA id XR_005638153.1
length 333
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id LOC120553302
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5383630 ~ 5386305 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACTACACAATCAAACATTTTCCAGCAGGAATCCTATCCGAAGTCGAGAAACATTAACAGCGGCATCCAAGATTCCAGGTGTAATGGCTCCGgAGCAGTACACAAGCTCCAAGATGCCGACAGGGGCTGGGGGAAGTGTCATCCAGTCAATCCCAAAGAAGTCTCCCTCAATCTTCCAACCATGGGCCATTGGTGGTGGAACATCAGGCTGACTCTTCAGGGACCTTCTGTATATGGCTGCCTGCAGATCTGCAGAGATGGCTTCTGATGCTACCTGACCTGATGTAACATGCCATGTCCTTGACCTCCATTGTGATGGCTGCTCTCTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19035 lncRNA upstream 33558 4782335 ~ 5350072 (+) True G14282
TU19108 lncRNA upstream 43735 5338329 ~ 5339895 (+) False G14336
TU19078 lncRNA upstream 76631 5213191 ~ 5306999 (+) True G14317
TU19092 lncRNA upstream 78735 5259491 ~ 5304895 (+) True G14326
TU19093 lncRNA upstream 79588 5260877 ~ 5304042 (+) True G14327
TU18873 lncRNA downstream 29563 5415868 ~ 5417135 (+) False G14187
TU19130 lncRNA downstream 127496 5513801 ~ 5528619 (+) False G14344
TU19158 lncRNA downstream 144999 5531304 ~ 5532129 (+) True G14359
TU19151 lncRNA downstream 162650 5548955 ~ 5559454 (+) True G14353
TU19171 lncRNA downstream 237371 5623676 ~ 5633716 (+) True G14372
XM_039819884.1 mRNA upstream 153185 5219650 ~ 5230445 (+) False LOC120571154
XM_039821261.1 mRNA downstream 60841 5447146 ~ 5461510 (+) True LOC120572059
XM_039785768.1 mRNA downstream 156986 5543291 ~ 5547333 (+) True LOC120549121
XM_039785737.1 mRNA downstream 255349 5641654 ~ 5711859 (+) True col4a3
XM_039786321.1 mRNA downstream 329965 5716270 ~ 5720289 (+) True sst1.2
XM_039785093.1 mRNA downstream 351833 5738138 ~ 5743105 (+) True sst1.1
TU18878 other upstream 294958 5087824 ~ 5088672 (+) False G14187
TU18942 other upstream 856253 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 962808 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other upstream 984587 4369073 ~ 4399043 (+) False LOC120570718
TU18913 other upstream 1010861 4363666 ~ 4372769 (+) False LOC120570718
TU19140 other downstream 124452 5510757 ~ 5521881 (+) True G14344
TU19135 other downstream 127496 5513801 ~ 5518149 (+) False G14344
TU19963 other downstream 1021738 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 1028282 6414587 ~ 6416070 (+) False spcs2
TU19934 other downstream 1028282 6414587 ~ 6415544 (+) False spcs2

Expression Profile