RNA id: TU19130


Basic Information

Item Value
RNA id TU19130
length 1319
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G14344
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5510757 ~ 5528619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCaacaagaccctggttgcagctgtcgccgtggtcctgctgcactccctgctgagctcagcgatgccctgcaatgtcatgctgcgtcctgctgaaccctgcagcttcccgctacatccagtcactgttccattattaatgtgactactatcgccatggttcatcacacccccaaccggctcgtcagacaccgcctaccaagagcctgggtctgtccgaggtttcttcccaagagggagtttttcctcgccactgtcgcactgtcgcactgcttgctcttgagggaattactggaattgttggaattgttggggctttgtaaattatagagtgtggtctagacctactctatctgtaaagtgtctcgagataacttatgttatgatttgatactataaataaaattgaattgaattgaatattgtgaacctaaattaatATACGGGCGTGGAGTCTGTCCTCTGCGTGTAACATcagccagccaatcacagacagcattagatcttggtaaaagcatgctgcgtgctgattggctcactgacgctgattaGATTTCCTCCTTAAGGTATTAatattgggtattgaatgacgaggtaTTTTTAGATTCCCGATACTTTAGAGgtaattcggtacccagccctaaataTGACGTTTAAATAATGAACCAACAACTAAACAaagtccaaacaacaacatgtgTACCGAACGATCATCTCTTTACAAACTAAATCTCAAACAAAGAATCAAAACGCTAAAATAATGACGTCTGGATTTCTCCGTCGAGTCGACTGAACCAACAATCTTGATTTGTCTGGAAAATaatcataatatataataaaatataatatagtcAAACAGAACCGAACAGACTCAGGTCAGCTGTGTGTCCAGAGAGgggaagtcccgccccttcctgtgtCACCACGGGGATTTATTCGGGAGAGACAGTTTAAATCATATTTAACTGATCACATGATGTTTGTCAGTTTAACAGATCATTTAGAGAGGGAAGtgtctgtctgggtgtgtgtgtgtgtctctgtctctgtgtgtgtgtgtgtgtgtctccgtccctctgtgtgtgtgtgtctccgtccctctgtgtgtgtgtgtctccgtccctctgtgtgtgtgtgtctctgtccctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtctgtgcgtgtgtgtgtgtgtctgtgcgtgtgtgtctgtgcgtgtgtgtgtgcatgtgtgtgtgtctgtgtgcgtgtgtgtgtccaacCGAACAGTAAAATGAAACGGTTGCATACTAAACAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18862 lncRNA upstream 96666 4923823 ~ 5417135 (+) False G14187
TU18873 lncRNA upstream 96666 5415868 ~ 5417135 (+) False G14187
TU19107 lncRNA upstream 117365 5338329 ~ 5396436 (+) True G14336
XR_005638153.1 lncRNA upstream 127496 5383630 ~ 5386305 (+) True LOC120553302
XR_005638154.1 lncRNA upstream 127496 5383630 ~ 5386305 (+) False LOC120553302
TU19158 lncRNA downstream 2685 5531304 ~ 5532129 (+) True G14359
TU19151 lncRNA downstream 20336 5548955 ~ 5559454 (+) True G14353
TU19171 lncRNA downstream 95057 5623676 ~ 5633716 (+) True G14372
TU19176 lncRNA downstream 107025 5635644 ~ 5636188 (+) True G14376
TU19810 lncRNA downstream 192614 5721233 ~ 5721444 (+) True G14761
XM_039821261.1 mRNA upstream 52291 5447146 ~ 5461510 (+) True LOC120572059
XM_039819884.1 mRNA upstream 283356 5219650 ~ 5230445 (+) False LOC120571154
XM_039785768.1 mRNA downstream 14672 5543291 ~ 5547333 (+) True LOC120549121
XM_039785737.1 mRNA downstream 113035 5641654 ~ 5711859 (+) True col4a3
XM_039786321.1 mRNA downstream 187651 5716270 ~ 5720289 (+) True sst1.2
XM_039785093.1 mRNA downstream 209519 5738138 ~ 5743105 (+) True sst1.1
XM_039779094.1 mRNA downstream 484229 6012848 ~ 6013786 (+) True LOC120545109
TU18878 other upstream 425129 5087824 ~ 5088672 (+) False G14187
TU18942 other upstream 986424 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 1092979 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other upstream 1114758 4369073 ~ 4399043 (+) False LOC120570718
TU18913 other upstream 1141032 4363666 ~ 4372769 (+) False LOC120570718
TU19963 other downstream 879424 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 885968 6414587 ~ 6416070 (+) False spcs2
TU19934 other downstream 885968 6414587 ~ 6415544 (+) False spcs2
TU19935 other downstream 885968 6414587 ~ 6415544 (+) False spcs2
TU20165 other downstream 1444226 6972845 ~ 6989396 (+) True G15019

Expression Profile