RNA id: TU19189



Basic Information


Item Value
RNA id TU19189
length 420
lncRNA type read_through
GC content 0.39
exon number 2
gene id G14383
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 3116707 ~ 3126213 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CATGTGTCTGTGTCtaagtgtctgactacattatgggatggatccctacagagatagaccttttagttaaagagtaagatccttttagtttaacatgaaacagccccaaaatcaccatcaccaaactccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccaga

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU18591 lncRNA downstream 101387 2977860 ~ 3015320 (-) True G13984
TU18611 lncRNA downstream 131133 2985324 ~ 2985574 (-) True G13997
TU18594 lncRNA downstream 136362 2977860 ~ 2980345 (-) False G13984
TU18593 lncRNA downstream 136362 2979727 ~ 2980345 (-) False G13984
TU18601 lncRNA downstream 148099 2964592 ~ 2968608 (-) True G13991
TU19185 lncRNA upstream 101862 3228075 ~ 3228624 (-) False LOC120570817
XR_005641295.1 lncRNA upstream 276255 3402468 ~ 3410949 (-) True LOC120571770
TU19243 lncRNA upstream 346724 3472937 ~ 3476382 (-) False G14426
TU19305 lncRNA upstream 463276 3589489 ~ 3639043 (-) True G14469
TU19318 lncRNA upstream 564067 3690280 ~ 3690581 (-) True G14481
XM_039820187.1 mRNA downstream 22378 3092162 ~ 3094329 (-) True LOC120571301
XM_039820469.1 mRNA downstream 106646 3001153 ~ 3010061 (-) True ostn
XM_039819966.1 mRNA downstream 143990 2970130 ~ 2972717 (-) True wdr74
XM_039778662.1 mRNA downstream 1027398 2077680 ~ 2089309 (-) True LOC120544710
XM_039778640.1 mRNA downstream 1061984 2041770 ~ 2054723 (-) True LOC120544691
XM_039819859.1 mRNA upstream 123959 3250172 ~ 3258908 (-) True LOC120571140
XM_039778723.1 mRNA upstream 232943 3359156 ~ 3362384 (-) True LOC120544814
XM_039778724.1 mRNA upstream 314896 3441109 ~ 3442316 (-) True LOC120544846
XM_039820196.1 mRNA upstream 316235 3442448 ~ 3443938 (-) True LOC120571310
XM_039778725.1 mRNA upstream 346267 3472480 ~ 3557562 (-) True LOC120544862
TU18607 other downstream 132209 2981061 ~ 2984498 (-) True G13995
TU18155 other downstream 1734986 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 1918983 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 1919021 1127891 ~ 1197686 (-) True G13587
XR_005638387.1 other upstream 147463 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 148965 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 150469 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 151959 3278172 ~ 3278279 (-) True LOC120554359
XR_005638383.1 other upstream 153398 3279611 ~ 3279720 (-) True LOC120554366

Expression Profile


TU19189 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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TU19189 Expression in each Bioproject

Bar chart with 8 bars.
TU19189 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.