RNA id: XM_039819781.1


Basic Information

Item Value
RNA id XM_039819781.1
length 2359
RNA type mRNA
GC content 0.59
exon number 4
gene id LOC120571085
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4028740 ~ 4055084 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACAGTGACATaacctttattttgaaggcgGTTGACCAGCGGATGTGCGGGTTGCTGATTTTCCGGTGGTTGTGTTCGGTGGTGTGTAGCCTATGTGTGGCTCGGTTCGGCTCGGCTCGTCTCAGAGGAACAGACCGGCAGCGGGTACAGTAGTATCAGCTGTTGTAGTAGACCTGTGACCGCGGAGGAAAGATGGCGGCCCCTGCTCTCTCTAGTCGGGCTGGCTCGGCGGGCAGCCTCGGGAACAGCCCCACCATGGCCGCCGGCAGGCTGCCTCACAGCGGCGGCGGTGCCGGGCCCGAACTGGACTTCAGGTCGGCGGCCCGCATGGAGGACCTGAACCGGCTCATCCAGGAGTTCAGCAAGCACGACCAGCGGGAGTACGACGACCAGCGGGCTCTGGAGATCCACACGGCCAAGGACTTCATCTTCTCCATGCTGGgAATGGTCCAGAAGTTGGACCAGAAGCTGCCGGTAGCTAACGAGTACCTGCTGCTGTCTGGCGGCGTGCGGGAGGGCGTGGTGGACATGGACCTGGACGAGCTGAGCGTGTACGCCCGCGGGACGGACTACGACATGGACTTCACCCTGCTGGTCCCGGCGCTGAAGCTCCACGACCGCAACCAGCCCGTGACGCTGGACATGAGGCACTCGGCGCTCGGCCACTCGTGGCTCAGCCTGCGCCTCTTCGACGAGGGAACCATCAACAGGTGGAAGGACTGCTGCACCGTGGTCGACCACATCAGCGGCACGGTGAACTACTTCTTCTCTCCGACGCTGGTGGCCGACTGGTTCCACCAGGCGGTCTCGCTGGTGCTGCTGGAGGTGCAGAAGAAGCCGCAGCGAGGCGTCCCGCGGGTGGAGAAGGTGCAGCGGAACGGCACGGTCATCTCCGTCATCCTGGGCGTGGGCAGCAGCCGCATGCTCTACGACATCGTGCCCGTGGTGTCCTTCAAAGGCTGGCCGGCCGTGGCGCAGAGCTGGCTGATGGAGAACCACTTCTGGGACGGCAAGATCACCGAGGAGGAGGTGATCAGCGGCTTCTACCTCGTCCCCGCCTGCTCGCACAAAGGCCGCAAGGAGAACGAGTGGCGGCTGTCCTTCGCCCGCAGCGAGGTGCAGCTGAAGAAGTGCATCTCGTCCAGCCTGATGCAGGCCTACCAGGCCTGTAAAGCCATCATCATCAAGCTGCTGTCGCGGCCCCGCGCCGTGAGCCCGTACCACCTGCGCAGCATCATGCTGTGGGCGTGCGACCGCCTCCCCGCCAACTTCCTGAGCCAGGACGACTTCTCCGCCCACTTCCTGCTGGGCCTGATCGACGACCTGCAGCACTGCCTGGTCAACAAGACGTGTCCCAACTACTTCATCCCGCAGTGCAACATGCTGGAGCAGCTGTCGGACGCCGACGCCATGCTGCACGCCCGCAAACTCTCCTCGGTGCGCTCGGACCCGGCCGAGCACCTGCGCAGCACCATCGAGCACGCCAAGGCCGCCAACCGGCTCACGGTGGAGGTGCAGTGGCGCGGAGGAGGCGCAGGCAGCAGCGCCACAGGCAACCCGCCCTCGCCGCAGTCGGACGCCGGCGGCGACAGCCAACCCGACGACCGGCTGGCCAAGAAGCTGCAGCAGCTCGTCACCGAGAACCCCGGGAAGTCCATCTCGGTGTTCATCAACCCCGACGACGTCACGCGGCCGCACTTCCGCATCGACGACAAGTTCTTCTGAGACACgaaacaaactgagacacaagcattctcttcttctcctccttcttcttcttctctttgccTTCTCGGGACTTGAATAGAGACTGTAGACTCTATTCTCTGGACTCAAGACTCTGGACTCTATTCTCTGGAATCGGGTCCAGAGAATAGAGTCTTGAGTCGACTCAAGatcctattctctggactcAAGACTCTATTCTCTGGACTCAATACCCTATTTTTTGGACTCAAGACCCTATTCTCTGGACTCAAGATTCTTTTCTCTGGACTCAAGACCCTATGAGACCCTATTCTTTGGACTCGTGACCTGACTTGGTCTCGCAGACTGATGACTTGGACTTGGAGGATATATAAAATCGGATCGCATTGATGAAAAAGGACTCAGACgttggatgaagtttctgactaAATAGGTTCTGAGAAACGttctcttctccttctcctctctgccTTCCCAGGGTACCTTCAGGGTACCTGCCGGGTTTTTAACGTGTTAAACGAGACTAAGATCGGAATCAGAACTGCATTTAttgttagggttgggtatcgtttggggtTTTtccgattccggtgctaaaacgatacttttaaaaccgtgccggtgcctgaaccgatacttaaaaaaaatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19350 lncRNA downstream 41289 3940717 ~ 3992111 (-) False LOC120544895
XR_005641287.1 lncRNA downstream 100591 3924135 ~ 3932809 (-) True LOC120571752
TU19365 lncRNA downstream 142894 3889723 ~ 3890506 (-) True G14508
TU19355 lncRNA downstream 159184 3782051 ~ 3874216 (-) True G14499
TU19339 lncRNA upstream 987 4048776 ~ 4050680 (-) True G14491
TU19340 lncRNA upstream 987 4048776 ~ 4050680 (-) False G14491
TU19341 lncRNA upstream 987 4048776 ~ 4050680 (-) False G14491
TU19342 lncRNA upstream 987 4048776 ~ 4050680 (-) False G14491
TU19343 lncRNA upstream 987 4048776 ~ 4050680 (-) False G14491
XM_039778759.1 mRNA downstream 17444 3899453 ~ 4015956 (-) True LOC120544895
XM_039819729.1 mRNA downstream 109544 3921782 ~ 3923856 (-) True LOC120571031
XM_039820140.1 mRNA downstream 241718 3739762 ~ 3791682 (-) False LOC120571265
XM_039820131.1 mRNA downstream 264004 3739762 ~ 3769396 (-) False LOC120571265
XM_039820125.1 mRNA downstream 278060 3739762 ~ 3755340 (-) True LOC120571265
XM_039778771.1 mRNA upstream 4403 4052192 ~ 4078128 (-) True LOC120544902
XM_039778784.1 mRNA upstream 40387 4088176 ~ 4138553 (-) True LOC120544909
XM_039819516.1 mRNA upstream 613825 4661614 ~ 5252192 (-) False LOC120570840
XM_039819499.1 mRNA upstream 613825 4661614 ~ 5252186 (-) False LOC120570840
XM_039819491.1 mRNA upstream 613825 4661614 ~ 5252186 (-) False LOC120570840
TU19241 other downstream 310768 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 640363 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 675203 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 684782 3348428 ~ 3348618 (-) True LOC120554594
XR_005638534.1 other downstream 686280 3346933 ~ 3347120 (-) True LOC120554609
TU19429 other upstream 478751 4526540 ~ 4672863 (-) False G14552
TU19448 other upstream 478751 4526540 ~ 4577885 (-) False G14552
TU19473 other upstream 478751 4526540 ~ 4822250 (-) False G14552
TU19430 other upstream 686460 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 686460 4734249 ~ 4779090 (-) False G14552

Expression Profile