RNA id: TU19342


Basic Information

Item Value
RNA id TU19342
length 1559
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G14491
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4048776 ~ 4050680 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAATCTGGGTTAATCAGTAATATcgggcaattgtgcagcttgtatttaccttcacaacaAGTGCTTTTTATGCCGCTGACTGACTCAGATTGTTATTCTCAGTGTCTgataacattatggaaaggatccctacagagatagagcttttagttaaagagtgaGATCCTTTttgtaaacataaaaacatccgctaAATgtcgttcgctaaacccaccagactccatgtaaataatcattgATTTAAGCaccgtaaaacacacttcatccACAGTCgatagaaacaaaataaaactatgaaaagcagtttttgggtcgtcttttccacttttccatccatcacaactctagttgaggttgaaataaacacatagtttactgatttacatgtaaaaatatgttggctctacacacgctaaaagtcctgattatttacatggagtctggtgggtttagagctagtgacctcagagctgtttctggttaaacagaaaggtcttaaacaggtttttaaaaaggtctctCTCTATAATTTCAcagactgttgttcccatcagtcacttctacacaaaaacatgagaaaatagggtccaggttgaaaaaaactggagcgttttatatctttattgtTGCACATGGTTAAAGAAAAGACACATTTTAATCAAAGGTACTACAGATATATAGATGTGTATATATAGACGACGATGATCTGAGGGACAGAGTATTTAAAGCCGTGATTTAAAGTTTATTATATTTGTGTCATATACAGAGATGAATAGTACTTATATGTTGGTGTTAAAATGATACTTGTACTGCATAATATTTGCTGATTAaggtgttttaaatgtgtagagAATCAGAAGGAGAGGACGCCCTCTGGTGACACAACGTCAGACTGagtttaaatataatttaaaggtTTTATTCTCGTTTCTTCTCTTCCACGTTTAATTTTTTTGCACGATTTAATTCGTGAACTACAAATAACATCACATGTGATGATTACCTGCTTCAGTTTTTAAGTGATTATTGACgatcttggtgtgtgtgtgtgtgtctgagtctgtttgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgggtctgtgtctttttgtgtgtgtgtgtgtttttgtgtgtgtctgtgtctgtttgtgtgtgtctgtttgtgtgtgtctgtgcgtgtgtgtgctgtgtctgtgtgtgtgtgtgtgtgtgtctctgtgtgtatttttctccCAGttaaaagtttagttttcatgTTTTTGGGACACTGACATGTGAAAAtgtcatatttcatatttaaatcACAAAGTGTAAAACCAGACTCACCAGCATTGTAACACTTCCTGttctttcaaaataagagcgCAGTTCCCCACTCAAccaccatgcacacacactctggtTATTCTCTGTCTCCTGTAAACGTATGAAATGAATCTTTCTGTACATAAATCAGCtttaaatgacaataaaacgaATCAAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19332 lncRNA downstream 14606 4028740 ~ 4034170 (-) False LOC120571085
TU19335 lncRNA downstream 14606 4028740 ~ 4034170 (-) True LOC120571085
TU19350 lncRNA downstream 56665 3940717 ~ 3992111 (-) False LOC120544895
XR_005641287.1 lncRNA downstream 115967 3924135 ~ 3932809 (-) True LOC120571752
TU19365 lncRNA downstream 158270 3889723 ~ 3890506 (-) True G14508
TU19374 lncRNA upstream 43679 4094359 ~ 4102322 (-) True G14517
TU19378 lncRNA upstream 70673 4121353 ~ 4121664 (-) True G14521
TU19382 lncRNA upstream 79344 4130024 ~ 4133142 (-) True G14524
TU19385 lncRNA upstream 97020 4147700 ~ 4148078 (-) True G14526
XR_005641301.1 lncRNA upstream 166644 4217324 ~ 4222591 (-) True LOC120571793
XM_039819781.1 mRNA downstream 987 4033400 ~ 4047789 (-) False LOC120571085
XM_039778759.1 mRNA downstream 32820 3899453 ~ 4015956 (-) True LOC120544895
XM_039819729.1 mRNA downstream 124920 3921782 ~ 3923856 (-) True LOC120571031
XM_039820131.1 mRNA downstream 279380 3739762 ~ 3769396 (-) False LOC120571265
XM_039778771.1 mRNA upstream 1512 4052192 ~ 4078128 (-) True LOC120544902
XM_039778784.1 mRNA upstream 37496 4088176 ~ 4138553 (-) True LOC120544909
XM_039819516.1 mRNA upstream 610934 4661614 ~ 5252192 (-) False LOC120570840
XM_039819499.1 mRNA upstream 610934 4661614 ~ 5252186 (-) False LOC120570840
XM_039819491.1 mRNA upstream 610934 4661614 ~ 5252186 (-) False LOC120570840
TU19241 other downstream 326144 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 655739 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 690579 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 700158 3348428 ~ 3348618 (-) True LOC120554594
XR_005638534.1 other downstream 701656 3346933 ~ 3347120 (-) True LOC120554609
TU19429 other upstream 475860 4526540 ~ 4672863 (-) False G14552
TU19448 other upstream 475860 4526540 ~ 4577885 (-) False G14552
TU19473 other upstream 475860 4526540 ~ 4822250 (-) False G14552
TU19430 other upstream 683569 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 683569 4734249 ~ 4779090 (-) False G14552

Expression Profile