RNA id: TU19526



Basic Information


Item Value
RNA id TU19526
length 844
lncRNA type read_through
GC content 0.49
exon number 4
gene id G14553
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5159330 ~ 5350376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


caaacacacacacacacacacagatagaaatCCACTGACAggcacagatagacacacacacacagacaagcacacatacacacacacacacacacacacacacacacagagacacacaaaggcagacacacacacacacacacacacacacagaacatgtctactttttcttcttctctctctctttcgtgAGATGTAATGCCCCcctcctttcagggtggagcctgctggagtcagataTTTGACACCAGGTCCATGGAGatattcctgtgaactcacactggacacaaacacagtgaacagaaaactcaaactgtctgacaacaacaggaaggtgacacgtGTGGAGGAgtatcagccatatcctgatcatccagagaggtttgactcctggcctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggtggagacgAGAGGAAGGGTtgatatatcagtgagttacagaggaatcaggaggagaggagacggtagagactgtttgtttggatgtaatgatcagtcctggagtctgatctGCTCTGATGATGGTTACTCTGTCTGGCACAATAAGAGACaaacatccatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacagagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcagcctctttATCCTGGGTTCTGGTTCTGCTCtcctggttcctcagtgtctctgtgtcctgtgtaggacggagagtctcctcctgattctcactgctgatcagttgagtctgtacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19694 lncRNA downstream 19947 5172157 ~ 5172941 (-) True G14688
TU19529 lncRNA downstream 32697 5159330 ~ 5160191 (-) False G14553
TU19692 lncRNA downstream 38911 5152764 ~ 5153977 (-) True G14687
TU19688 lncRNA downstream 50328 5142217 ~ 5142560 (-) True G14685
TU19569 lncRNA downstream 66300 5126206 ~ 5126588 (-) True G14578
TU19696 lncRNA upstream 5713 5356089 ~ 5356586 (-) True G14690
XR_005637379.1 lncRNA upstream 10329 5360705 ~ 5361223 (-) False LOC120549375
XR_005637378.1 lncRNA upstream 10329 5360705 ~ 5361175 (-) False LOC120549375
TU19728 lncRNA upstream 10329 5360705 ~ 5361216 (-) True LOC120549375
TU19731 lncRNA upstream 65680 5416056 ~ 5462266 (-) True G14714
XM_039820686.1 mRNA downstream 217306 4949179 ~ 4975582 (-) True LOC120571626
XM_039819571.1 mRNA downstream 429472 4661614 ~ 4763416 (-) False LOC120570840
XM_039819436.1 mRNA downstream 429472 4661614 ~ 4763416 (-) False LOC120570840
XM_039819445.1 mRNA downstream 429472 4661614 ~ 4763416 (-) False LOC120570840
XM_039819427.1 mRNA downstream 429472 4661614 ~ 4763416 (-) False LOC120570840
XM_039784725.1 mRNA upstream 115574 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 126604 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 139614 5489990 ~ 5510035 (-) False LOC120554300
XM_039792528.1 mRNA upstream 165283 5515659 ~ 5535486 (-) True LOC120553850
XM_039788062.1 mRNA upstream 207987 5558363 ~ 5639200 (-) True col4a4
TU19570 other downstream 80909 5062988 ~ 5111979 (-) True G14579
TU19434 other downstream 413798 4734249 ~ 4779090 (-) False G14552
TU19742 other upstream 138880 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 160340 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 353011 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 951973 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1670607 7020983 ~ 7032467 (-) False atg16l2

Expression Profile