RNA id: TU19538


Basic Information

Item Value
RNA id TU19538
length 1776
lncRNA type read_through
GC content 0.45
exon number 3
gene id G14556
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4808566 ~ 5113100 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAatatttctgtaagtgtgatcCTGTACAGCAGCCAAcaccaaagcttttagtctgaaTAATCacgaattcacaaaatgtaaagaggaaaaaatgcgttctgttatttatcatttcaagcatttagagcaaaaaccagCCGCCTGTATTAAACGAAAATAGTAGGAAAttgtatgcaaatgaggcatacatgacgagtgcatagccttcTTATCGGTCCATTcaccattaaagctgggcttttccacctcttggacagtgacatgtttacctgacaacagccgttTCTTTCTGctagcattttccaccaatcaggacgctgcatcAATCAgacagcacggtggctcagtggttagcacttctgcctcacagcaagaaggttctgggttcgatcCCAGGTcgtcccgggcctttctgtgtggagtttgcatgttctccccgtgcttgcgtgggtttcctccgggtgctccggtttcttcccaccacaaagacatgcatgcaactaggactacagttgaaaattagccgactggttaacactggcgcatttacagaaatgttcattaatgtgcattgtcctaatataaataaatcttcttcttcttcaatgTTTCCATAACGACAGACTTTAActatcactcctcagtgaactgcctccgagtctgagatcattttctagttaaagagccagttatcattaaggagtttccatgttttttaggggttttctcacactaatacatgtacaaaataaatagtattaattcagtaagaaagTGAAGATTTCtaacaagaataggcgtattaggtataaattcattttattttctttatttgaaagtccgtcCCCCacagtgtctgcttagaaacattctggcccttgaaaaaatgtagttgacgACCCCGGCGgtacagactcaactgatcagctgtgagaaacaggaggagactctccATCCTACACAGgactcagagacactgaggaaccagaaCCAAACCCAAACGCAggatagagaggctgagtgaatgtggtgttgaaggtgtggaggtggatcagtgagtcagaggagactgagtagaaggacagagagccagcaggacagtccacatacactgctactctaccagagacagaggaggaggagatgtctgctactctaccagagacagaggaggaggagatgtctgctactctaccagagacagaggaggaggagatgtctgctactctaccagagacagaggaggaggagatggatgtttCTCTCTTATTGTGCCAGACAGAGTAACGACCATCAGAGCACtccagactccaggactgatcattccaTCCAAACAAACAGTCAGCACTGCGtcctctcctcctgattcctctgtaactcactgatataaaAACATTTCCTCTCGTCTCCActtcccagtaacagcgaccagtcagaccatctctacacagcagctgaggccaggagtcaaacctctctggatgatcaggatatggctgatcctcctccacacgtgtcaccttcctgttgttgtcagacagtttgaggtttctgttcactgtgtttgtgtccagtgtgagttcacaggaatctgacggagagaaggagacacaacacagctgcagttattaaccaatcagcactttgatgatgacatcagagggttgaatgagtgatgtcacagtttgatgaatgaaattaaaaacacacttacatCTCCATGGACCTGGTGTCAAAtatctgactccagcaggctccaccctgaaaggaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19643 lncRNA downstream 20264 4787573 ~ 4788302 (-) True G14644
TU19493 lncRNA downstream 24285 4564604 ~ 4784281 (-) False G14552
TU19425 lncRNA downstream 24285 4684710 ~ 4784281 (-) False G14552
TU19572 lncRNA downstream 27465 4768650 ~ 4781101 (-) True G14581
TU19640 lncRNA downstream 28156 4779995 ~ 4780410 (-) True G14641
TU19680 lncRNA upstream 25381 5090319 ~ 5094729 (-) True G14679
TU19569 lncRNA upstream 61268 5126206 ~ 5126588 (-) True G14578
TU19688 lncRNA upstream 77279 5142217 ~ 5142560 (-) True G14685
TU19692 lncRNA upstream 87826 5152764 ~ 5153977 (-) True G14687
TU19529 lncRNA upstream 94392 5159330 ~ 5160191 (-) False G14553
XM_039819571.1 mRNA downstream 45150 4661614 ~ 4763416 (-) False LOC120570840
XM_039819436.1 mRNA downstream 45150 4661614 ~ 4763416 (-) False LOC120570840
XM_039819445.1 mRNA downstream 45150 4661614 ~ 4763416 (-) False LOC120570840
XM_039819427.1 mRNA downstream 45150 4661614 ~ 4763416 (-) False LOC120570840
XM_039819451.1 mRNA downstream 70654 4661614 ~ 4737912 (-) False LOC120570840
XM_039778857.1 mRNA upstream 188056 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 236867 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 401012 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 412042 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 425052 5489990 ~ 5510035 (-) False LOC120554300
TU19434 other downstream 29476 4734249 ~ 4779090 (-) False G14552
TU19430 other downstream 44595 4734249 ~ 4763971 (-) False G14552
TU19455 other downstream 44595 4734249 ~ 4763971 (-) False G14552
TU19480 other downstream 44595 4734249 ~ 4763971 (-) False G14552
TU19476 other downstream 73870 4734249 ~ 4734696 (-) False G14552
TU19530 other upstream 149831 5214769 ~ 5305369 (-) True G14553
TU19742 other upstream 424318 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 445778 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 638449 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 1237411 6302349 ~ 6302812 (-) True G14853

Expression Profile