RNA id: TU19560


Basic Information

Item Value
RNA id TU19560
length 396
lncRNA type read_through
GC content 0.45
exon number 2
gene id G14569
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4914105 ~ 5006775 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTATTTGAAGGAGTGTGCATGAGACTGACACAAAACAACCCAGACGGGACGTAGTTCCATCCAATGAGACTCGTTCCAGTTTGCTGGATGTTCACAACTCACCTCAATCTTCTTCTTAACATTTCAATTTCCCTTTCCATTGTTATTCTCTCCTTCTGCCATTCAAGTCTCTCCATCAatcctctctcctccATTTCAAGTAGCCTCTCCTCCATTTCTATTCTCCTCTCCCTTACAGGTCTTTTCTTAAAGTAGCGTTGGCTCCATGGACCAGAtactcttcatggacacacagctgggttcaggttcaggttcagcagggtctggtctctgatgggtcctgttagaaagagaggaagaccactttttaatctccagaaacagaagctgctgg

Function

GO: NA

KEGG:

id description
ko04657 IL-17 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641263.1 lncRNA downstream 11437 4901444 ~ 4902668 (-) True LOC120571684
TU19648 lncRNA downstream 20052 4811476 ~ 4894053 (-) True G14649
TU19567 lncRNA downstream 41419 4871269 ~ 4872686 (-) True G14576
TU19491 lncRNA downstream 48862 4826345 ~ 4865243 (-) False G14552
TU19643 lncRNA downstream 125803 4787573 ~ 4788302 (-) True G14644
TU19680 lncRNA upstream 83544 5090319 ~ 5094729 (-) True G14679
TU19569 lncRNA upstream 119431 5126206 ~ 5126588 (-) True G14578
TU19688 lncRNA upstream 135442 5142217 ~ 5142560 (-) True G14685
TU19692 lncRNA upstream 145989 5152764 ~ 5153977 (-) True G14687
TU19529 lncRNA upstream 152555 5159330 ~ 5160191 (-) False G14553
XM_039819571.1 mRNA downstream 150689 4661614 ~ 4763416 (-) False LOC120570840
XM_039819436.1 mRNA downstream 150689 4661614 ~ 4763416 (-) False LOC120570840
XM_039819445.1 mRNA downstream 150689 4661614 ~ 4763416 (-) False LOC120570840
XM_039819427.1 mRNA downstream 150689 4661614 ~ 4763416 (-) False LOC120570840
XM_039819451.1 mRNA downstream 176193 4661614 ~ 4737912 (-) False LOC120570840
XM_039778857.1 mRNA upstream 246219 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 295030 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 459175 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 470205 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 483215 5489990 ~ 5510035 (-) False LOC120554300
TU19473 other downstream 91855 4526540 ~ 4822250 (-) False G14552
TU19434 other downstream 135015 4734249 ~ 4779090 (-) False G14552
TU19430 other downstream 150134 4734249 ~ 4763971 (-) False G14552
TU19455 other downstream 150134 4734249 ~ 4763971 (-) False G14552
TU19480 other downstream 150134 4734249 ~ 4763971 (-) False G14552
TU19570 other upstream 56213 5062988 ~ 5111979 (-) True G14579
TU19530 other upstream 207994 5214769 ~ 5305369 (-) True G14553
TU19742 other upstream 482481 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 503941 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 696612 5703387 ~ 5705977 (-) True G14754

Expression Profile