RNA id: TU19579


Basic Information

Item Value
RNA id TU19579
length 233
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G14588
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4682397 ~ 4775530 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catggttaaatgttgtgttaacagagttagctgttgtgttagcatggttaaatgttgtgttaacagagttagctgttgtgttagcagcattagctgttgtgttagcagggttaaaGGAGAACAGCTGGGCGTatgatacacacacacacaaacacaaacacacacacacacacacaggtacgacacacacatacacacacacacacacaggtacgatacacacacacacacac

Function

GO:

id name namespace
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19475 lncRNA downstream 20838 4565820 ~ 4661559 (-) False G14552
TU19629 lncRNA downstream 31604 4600359 ~ 4650793 (-) True G14633
TU19631 lncRNA downstream 32348 4602273 ~ 4650049 (-) True G14635
TU19633 lncRNA downstream 42353 4639163 ~ 4640044 (-) True G14636
TU19634 lncRNA downstream 42353 4639645 ~ 4640044 (-) False G14636
TU19640 lncRNA upstream 4465 4779995 ~ 4780410 (-) True G14641
TU19643 lncRNA upstream 12043 4787573 ~ 4788302 (-) True G14644
TU19537 lncRNA upstream 33036 4808566 ~ 5113100 (-) True G14556
TU19538 lncRNA upstream 33036 4808566 ~ 5064938 (-) False G14556
TU19648 lncRNA upstream 35946 4811476 ~ 4894053 (-) True G14649
XM_039819601.1 mRNA downstream 9534 4661614 ~ 4672863 (-) False LOC120570840
XM_039819592.1 mRNA downstream 9542 4661614 ~ 4672855 (-) False LOC120570840
XM_039819581.1 mRNA downstream 12363 4661614 ~ 4670034 (-) False LOC120570840
XM_039819625.1 mRNA downstream 12363 4661614 ~ 4670034 (-) False LOC120570840
XM_039819612.1 mRNA downstream 12363 4661614 ~ 4670034 (-) False LOC120570840
XM_039820686.1 mRNA upstream 173649 4949179 ~ 4975582 (-) True LOC120571626
XM_039778857.1 mRNA upstream 477464 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 526275 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 690420 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 701450 5476980 ~ 5484148 (-) True LOC120544977
TU19429 other downstream 9534 4526540 ~ 4672863 (-) False G14552
TU19448 other downstream 104512 4526540 ~ 4577885 (-) False G14552
TU19241 other downstream 959765 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 1289360 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 1324200 3358125 ~ 3358197 (-) True trnav-aac
TU19570 other upstream 287458 5062988 ~ 5111979 (-) True G14579
TU19530 other upstream 439239 5214769 ~ 5305369 (-) True G14553
TU19742 other upstream 713726 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 735186 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 927857 5703387 ~ 5705977 (-) True G14754

Expression Profile