RNA id: TU19707


Basic Information

Item Value
RNA id TU19707
length 429
lncRNA type intronic
GC content 0.39
exon number 2
gene id G14695
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5232411 ~ 5233383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctcctatccattaaaggtagaaatgcccaaaaaataatcttaaaaacagGATATTTGCCTTTTCTCTTGAATAACAACATGTCTATGAACTCTCcatctggcccttgatgtgattctcagtGAAGCTGAGTTTGACTCCTCTGTCCTACAGGTTATAAATAATCACATCATAATGAAACTAGTTGCCAACCAGACGTTACCAACGGTGACATTTAAAGCTCCGTTGTGTGAGAacttctcccatctagcggtgagaTTGTAGAtgacaaccagctgaatatgaggtgagattgtagataacaaccagctgaatatgaggtgagattgtagataacaaccagctgaatatgaggagagattgtagataacaaccagctgaatatgaggtgagattgtagataacaaccagctgaataaaAGGCTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641260.1 lncRNA downstream 20237 5193427 ~ 5212174 (-) True LOC120571674
TU19477 lncRNA downstream 39033 4537404 ~ 5193378 (-) False G14552
TU19694 lncRNA downstream 59470 5172157 ~ 5172941 (-) True G14688
TU19529 lncRNA downstream 72220 5159330 ~ 5160191 (-) False G14553
TU19692 lncRNA downstream 78434 5152764 ~ 5153977 (-) True G14687
TU19583 lncRNA upstream 20331 5253714 ~ 5254663 (-) True G14592
TU19719 lncRNA upstream 96368 5329751 ~ 5396435 (-) True G14706
TU19582 lncRNA upstream 108839 5342222 ~ 5343382 (-) True G14591
TU19696 lncRNA upstream 122706 5356089 ~ 5356586 (-) True G14690
XR_005637379.1 lncRNA upstream 127322 5360705 ~ 5361223 (-) False LOC120549375
XM_039820686.1 mRNA downstream 256829 4949179 ~ 4975582 (-) True LOC120571626
XM_039819571.1 mRNA downstream 468995 4661614 ~ 4763416 (-) False LOC120570840
XM_039819436.1 mRNA downstream 468995 4661614 ~ 4763416 (-) False LOC120570840
XM_039819445.1 mRNA downstream 468995 4661614 ~ 4763416 (-) False LOC120570840
XM_039819427.1 mRNA downstream 468995 4661614 ~ 4763416 (-) False LOC120570840
XM_039778857.1 mRNA upstream 19611 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 68422 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 232567 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 243597 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 256607 5489990 ~ 5510035 (-) False LOC120554300
TU19570 other downstream 120432 5062988 ~ 5111979 (-) True G14579
TU19434 other downstream 453321 4734249 ~ 4779090 (-) False G14552
TU19742 other upstream 255873 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 277333 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 470004 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 1068966 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1787600 7020983 ~ 7032467 (-) False atg16l2

Expression Profile