RNA id: XM_039793120.1



Basic Information


Item Value
RNA id XM_039793120.1
length 1782
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC120554300
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5489256 ~ 5510035 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCAGTaaagtgtgtgttattttgAGCATACTCCACGGCATCCTTTCTCATTATACATGGTCAACGAGACATTTAGAACATGTTTAAATCAgcatgacagcacacacacatatatacacacacacacacacacacgcagcagtGCCACATCAGAGccacagagaggcagacagcaTCCCCCCCAGCTGTGTTTTTCTCGCCGTGTGTGGAGATTTTAGGACATCAAGTTTCCACATGAGGGACTTTCAGGATCCCGAAAGCTGAGTCGGAGGTGAAACTGTGTGTTGATAACGCTGTGTGTCCAGCGGGTCATTGACCTGACGGGACCAGGTTCACACTGAGACCTGCAGCGCTGAAACTAACCCCAGCAGAGGATCAGACCAGACGGGACCAGGTTCACACTGAGACCAAAACCACTTCACATCAGCCACCAAATCTGAGCCCACGGTGTCTCCTGGTGTCTCCCAGTGTCTCTCGGTGTCTCCCAGCATGTCGCCGGGCCTGCAGATCGTGGGTCTGATCCTGGGCGTGGTGTCCTGGTGTCTCCAGTCCAGCTGCACGTCGTCCCAGGTGTGGAAGACGCGGAGCCAGGTGGAGTCGGTGAGCAGCAGCCAGTGGCAGTTCGAGGGTCTGTGGATGAGCTGCGCCGCCACGTCGCTCGGCTCCGTGCAGTGCAGCAAGTTCAAGACGGTGCTGGGCCTGCCGGcccaCCTGCAGGTGTGCCGGGCTCTGATGATCCTGTCTCTGCTGCTCGGGCTCGCCTCCATCATCGTCACCGTTCTGGGACTCCGCTGCACCAAGATCGGCCGGACCTCGGAGCGCGCCAAGGACCAGATCGCCCTGACCGGAGGAgtcctcttcatcctctctgGTGTCTCCACTCTGACGGCCGTGTCCTGGTACGCCGGCAGAGTCATCCACGAATTCTACGACCGCTTGTACGGCGGAGTCAGgtTTGAGCTGGGTACTGGTCTGTATCTGGGCTGGGCGGCCTCCTGTCTGGCCATCCTGGGAGGATCCATGCTCTGCTGCTCCTGCAGGAAGACTGCCCCCCCCGCACGCCAGTTCTCCTACCACCTCTCCACGACCAGCCAGGGTCAGAAGATCTACCGAGCGGCGCCGGCCTCGGACAGCGACATCGCCAAAGCTTACGTCTAGACCCGCCTGACGTCACCACACGATCTCATTCAGGGGCCGAGAAACCCCCCAAACCTGTTGTCTCTGAATGCAACATGTCACGTTGGTGTTTTACACCCCTGTGTTGTGTCCAATCagcactttttcaatgttttcgtCTCTTTTATCGACATTTTTGGctgttttttcaaagttttgggctcttttttcaatgtttttcacTCTTTTTTCACGTTTAATGCATCCTTTCACTACTAttgctttgagtgtctatgataaagcgctatataaatgtaataaaataatattgtatgtataaacaccactaacaccaacttattactacttttacacttattttgaggaattcatggtcaataaacctcatttttAGGAAATAATacctaattcttgagttaaaaaagcagaaattatgaatgattTAGACTCATATTAAAGGAAAGATTACAGAAAGGTTAATGTCAacgttcaagtcaagtcaaatttaaaatgctaatTTAAAAGAACTAAAAAACCCAAAAGTCAATGAAACTAGAGACAAAATCGTTTATTGTACTTGTGAAGCACGATGTGTGGAATCATCCAAATTAGtacttaaaaagaaacccatatattcttttttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19779 lncRNA downstream 12599 5472733 ~ 5477391 (-) True G14735
TU19731 lncRNA downstream 27724 5416056 ~ 5462266 (-) True G14714
XR_005637379.1 lncRNA downstream 128767 5360705 ~ 5361223 (-) False LOC120549375
TU19728 lncRNA downstream 128774 5360705 ~ 5361216 (-) True LOC120549375
XR_005637378.1 lncRNA downstream 128815 5360705 ~ 5361175 (-) False LOC120549375
TU19755 lncRNA upstream 486 5510521 ~ 5512031 (-) True G14722
TU19766 lncRNA upstream 38919 5548954 ~ 5550874 (-) True G14723
TU19769 lncRNA upstream 45439 5555474 ~ 5558816 (-) False col4a4
TU19791 lncRNA upstream 123473 5633508 ~ 5674273 (-) True G14746
TU19795 lncRNA upstream 124470 5634505 ~ 5635531 (-) True G14747
XM_039778893.1 mRNA downstream 5842 5476980 ~ 5484148 (-) True LOC120544977
XM_039784725.1 mRNA downstream 17403 5465950 ~ 5472587 (-) True LOC120548458
XM_039819337.1 mRNA downstream 163232 5301805 ~ 5326758 (-) True LOC120570786
XM_039778857.1 mRNA downstream 222695 5252994 ~ 5267295 (-) True LOC120544953
XM_039820686.1 mRNA downstream 514408 4949179 ~ 4975582 (-) True LOC120571626
XM_039792528.1 mRNA upstream 5624 5515659 ~ 5535486 (-) True LOC120553850
XM_039788062.1 mRNA upstream 48328 5558363 ~ 5639200 (-) True col4a4
XM_039821091.1 mRNA upstream 252159 5762194 ~ 5771638 (-) True LOC120571926
XM_039821082.1 mRNA upstream 254544 5764579 ~ 5771638 (-) False LOC120571926
XM_039778903.1 mRNA upstream 263728 5773763 ~ 5774605 (-) True LOC120544982
TU19530 other downstream 184621 5214769 ~ 5305369 (-) True G14553
TU19570 other downstream 378011 5062988 ~ 5111979 (-) True G14579
TU19455 other downstream 726019 4734249 ~ 4763971 (-) False G14552
TU19757 other upstream 681 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 193352 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 792314 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1510948 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 1510948 7020983 ~ 7032467 (-) False atg16l2

Expression Profile