RNA id: TU19811


Basic Information

Item Value
RNA id TU19811
length 537
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G14762
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5721239 ~ 5721775 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacagactcagattattattctaagtgtctgacaacattatgggatggatccctacagagatagaccttttaattaaagagtaagatccttttagtttaacatgaaacagccccgaaatcaccatcaccaaactccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtttatagagccagcatatctccaccagactccatgtaaataatcaggatttttagcgtttatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatttccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatttccaccagactccatgtaaataatcaggacttttagcatgtatagagccagcatatttccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatttccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19798 lncRNA downstream 40465 5674449 ~ 5680774 (-) True LOC120549106
XR_005637329.1 lncRNA downstream 40473 5675410 ~ 5680766 (-) False LOC120549106
TU19791 lncRNA downstream 46966 5633508 ~ 5674273 (-) True G14746
TU19795 lncRNA downstream 85708 5634505 ~ 5635531 (-) True G14747
TU19769 lncRNA downstream 162423 5555474 ~ 5558816 (-) False col4a4
TU19874 lncRNA upstream 305095 6026870 ~ 6030460 (-) True G14816
TU19880 lncRNA upstream 315425 6037200 ~ 6038733 (-) True G14820
TU19881 lncRNA upstream 360718 6082493 ~ 6167461 (-) True G14821
TU19882 lncRNA upstream 360718 6082493 ~ 6164644 (-) False G14821
TU19894 lncRNA upstream 499580 6221355 ~ 6222054 (-) True G14832
XM_039788062.1 mRNA downstream 82039 5558363 ~ 5639200 (-) True col4a4
XM_039792528.1 mRNA downstream 185753 5515659 ~ 5535486 (-) True LOC120553850
XM_039793120.1 mRNA downstream 211204 5489990 ~ 5510035 (-) False LOC120554300
XM_039778893.1 mRNA downstream 237091 5476980 ~ 5484148 (-) True LOC120544977
XM_039784725.1 mRNA downstream 248652 5465950 ~ 5472587 (-) True LOC120548458
XM_039821091.1 mRNA upstream 40419 5762194 ~ 5771638 (-) True LOC120571926
XM_039821082.1 mRNA upstream 42804 5764579 ~ 5771638 (-) False LOC120571926
XM_039778903.1 mRNA upstream 51988 5773763 ~ 5774605 (-) True LOC120544982
XM_039778914.1 mRNA upstream 63363 5785138 ~ 5786067 (-) True LOC120544991
XM_039778924.1 mRNA upstream 70243 5792018 ~ 5792947 (-) True LOC120545000
TU19803 other downstream 15262 5703387 ~ 5705977 (-) True G14754
TU19757 other downstream 187412 5510716 ~ 5533827 (-) False G14722
TU19742 other downstream 217809 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 415870 5214769 ~ 5305369 (-) True G14553
TU19570 other downstream 609260 5062988 ~ 5111979 (-) True G14579
TU19916 other upstream 580574 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1299208 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 1299208 7020983 ~ 7032467 (-) False atg16l2
XR_005638460.1 other upstream 1320307 7042082 ~ 7042373 (-) True LOC120554469
TU20319 other upstream 1380591 7102366 ~ 7104090 (-) True G15110

Expression Profile