RNA id: TU19947


Basic Information

Item Value
RNA id TU19947
length 928
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G14863
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6381723 ~ 6388400 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatatatatatatatatatatatatatattacaacaaatattgatatttgaattataaaaaaggaaaagaagaactggttggttttacaaaaacaacaacggggaaaAGCAAACATCACACCCGGGAAACTATCTCCGGTGGTTTTCCCTCAGACGCACATTCTTGACAAAcattcttcctcctcctgttgcTATTGGGAAAGTGtgcggagtcaaacgtttagctccacccacGCTGAGCcactgcgtactgcagtcagggcttCCTCTCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGATGTCCGGTTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGCTGTCCGGCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCCGCTGTCCGGTTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGATCCCCTGCTGTCCGGCTCAGTTTGTTATAAAGTCAGTTTCTACGCTGACGAACCCCCGCTGTCCGGTTCAGTTTGCGCATCTGTTAGCCGACAGTCGAAGCGTTCCCCGAAGGCGTCCAGCAGGTGAGGGATGGCTTCCTCCACGCTGACGTCTCTCTGCAGCTCGGCGCTCAGCGACGTCACTCCTTTCCCCTCGATGCCGCACGGCACGATGTGACCGAACCACGACATGTCGGTGTTACAGTTCAGAGCCAGGCCGTGAGACGTGATGTAGCGCCCGCAGTGGATtcctacagacacacaacattcATACGACGAGATGTTTGATCCTGAGGGATCCTAACGTAGACCGACTGTACTAAATAAACTAATGATGCAGAAAgtaagggccgttacagagtcaacgcgagcaacgcgaacaagcaacgcgctccctttcatagtctaaacagcAGACGCAGAAGACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19903 lncRNA upstream 125706 6260871 ~ 6261222 (+) True G14841
TU19861 lncRNA upstream 196419 6164445 ~ 6190509 (+) True G14807
TU19862 lncRNA upstream 219516 6164445 ~ 6167412 (+) False G14807
TU19863 lncRNA upstream 221035 6164445 ~ 6165893 (+) False G14807
TU19845 lncRNA upstream 384014 6002208 ~ 6002914 (+) True G14792
TU19960 lncRNA downstream 5077 6393106 ~ 6401258 (+) False rnf169
TU19927 lncRNA downstream 26558 6414587 ~ 6415544 (+) False spcs2
TU19930 lncRNA downstream 26558 6414587 ~ 6415544 (+) False spcs2
TU19932 lncRNA downstream 26558 6414587 ~ 6417509 (+) True spcs2
TU19924 lncRNA downstream 27585 6415614 ~ 6416070 (+) False spcs2
XM_039786641.1 mRNA upstream 33927 6350475 ~ 6353001 (+) False LOC120549609
XM_039786631.1 mRNA upstream 33927 6352029 ~ 6353001 (+) True LOC120549609
XM_039779437.1 mRNA upstream 62518 6323484 ~ 6324410 (+) True LOC120545249
XM_039779425.1 mRNA upstream 95950 6290058 ~ 6290978 (+) True LOC120545240
XM_039779365.1 mRNA upstream 212418 6169219 ~ 6174510 (+) True LOC120545220
XM_039780287.1 mRNA downstream 5033 6393062 ~ 6404425 (+) True rnf169
XM_039780329.1 mRNA downstream 19956 6407985 ~ 6414994 (+) False spcs2
XM_039792148.1 mRNA downstream 32484 6420513 ~ 6448328 (+) True abcg1
XM_039779645.1 mRNA downstream 122716 6510745 ~ 6520784 (+) True LOC120545383
XM_039821263.1 mRNA downstream 124148 6512177 ~ 6516516 (+) True LOC120572075
TU19140 other upstream 865047 5510757 ~ 5521881 (+) True G14344
TU19135 other upstream 868779 5513801 ~ 5518149 (+) False G14344
TU18878 other upstream 1298256 5087824 ~ 5088672 (+) False G14187
TU18942 other upstream 1859551 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 1966106 4367603 ~ 4420822 (+) False G14246
TU19963 other downstream 20014 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 26558 6414587 ~ 6416070 (+) False spcs2
TU19934 other downstream 26558 6414587 ~ 6415544 (+) False spcs2
TU19935 other downstream 26558 6414587 ~ 6415544 (+) False spcs2
TU20165 other downstream 584816 6972845 ~ 6989396 (+) True G15019

Expression Profile