RNA id: XM_039780287.1


Basic Information

Item Value
RNA id XM_039780287.1
length 2191
RNA type mRNA
GC content 0.62
exon number 11
gene id rnf169
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6393062 ~ 6404425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCGGGGTTTGttttgagagagagaagacTCACCAGGGAAGATGGCGACCGCAGGGTCCGCCGAACGGCCTGGCAGACCGGCCAGAGCCGCCGCCAACGCCGGCAAGTACCGGTCCGGGTCAAGGCCCGGAGCTGGGTGTGTGTCCGGGTCCAGTCCTCCGGAGAACGAGGTGAAGAAGCGGCCGGGGTACGTAGAGGGGCAGAGCGGCGGCGGGTGCGGCAGCCCGCCCTGCGGACACCCGTCGGCCTGTCAGAGACGCTCCGGCAGCGGAGAGCGGCTCCGGAGGAGGAGTGACCCCGAGAAGAGTAGCAGCAGGCCGGCCAAGAGGAACTACGACACCCGGAAAGAGTTCTTCGTCTCTCCCGCTCTCATCCCAAAGTGCTGTGACCCTTTATCGGGACCCCCCGGGAAACACAAGCTGCTGCTGTCGGAGGACAGGGAGGACGCGAAGAGGAGACACGACGAAGAGCCGGGAGTTCTGTCTGACTCGGAGAACGAGGAGCCAATCAGCAGGAGGATCAGAAACATCTCGGCCTTCATCAGGAAAACCAAAACCTCTGCAGCCTTCACAGGtggtTCCCAGAGGAGTCAGAGCTGCACCGACCCAGTGGAGGACCGAGGAGGGAAGCTGAAAGTCGTCACCCAGCCGGCCCTCATGGACAGAGTCGGCATCAGTCACAGCTACACGGCAGGAATCCTCCTCTCGTCGGAGAACAGTCGCTCCGTCTCGGCTCCCATCACGGCTCCGGACCGCCGTCACCCGTGGCGACCGGTCCTCTCGTCGTCCTGCACCCCCCTGACCCTCCTGGCCCAGCCGCCGCAATGGCGCGCCAGCCCCGACAGCAACGACAGCATCTCGGAGGAGCTCAACCACTTCAAGCCCATCGTGTGCTCGCCGTGCACGCCGCCCAAGCGCCTGGCGGACGGCCGCCTGCTGGAGCCCGCCATTGTGAAGTCCACGCCGCGCAACCTGACGCGCGGCCTGCAGAAGGCCACCAGCTACGAGGCCAGCCCCGCCGTGCTGCAGAAGTGGCGGCAGATCGAACTCGACCGGCAGAGCCTCAAAGTCAGCTGCAAGGCCACGCTGACGAGCCCCGTCGGAGAGACGCACGGCGGAGCGGATGCAAAGACTCACCAGCCCCCCGCGGCGGCGCCGGCGCGGGACGGAGACGGAGTCCCGACCGCCAACAAGAGGCGGCTGCTGTTCGAGCCGCCCGCCGGAGACCCCGACCCCTTCCAGAAGCAGTCGGTGAAGATCCGGGTGCCGGCGGTCCGCTACAGCGGCGAGGCGGCCTTCAGAGGAAGTTCAGACTTTGAGCTGACGGTCCCCGAAACCTGCAGCGGTAGCGCGCTGTTTGGCCGGCGCCGCTCGTTCTCGCCGTACACTAAGAACGCCGGTTTCCAGTCGTGTAAATCGGCCTCGAAGGACCAAAGGTCTCGGAAGGACCAGAAGGTCTCGAAGGACCAGAAGGTCTCGAAGGACCAGAAGGACCAGAAGGTCTCGAAGGACCAGAAGGCCTCGAGTCAGAAGGTCTCGAAGGACCAGAAGGTCTCGAAGGACCAGAAGGCCTCGAAGGAAACGGCAAGGCCTCGGGCGACCAGGAAGGTCAAACGGAAAGTGGAGCAGAAGACCAAACACCTGGACGCGGAGCGGGACTCTGAGCGGAGGAGGAGCCGCTCGGCCGGCCAGGACGTCTACGAGGACCGGTACGCCGGCGGGCGGGCGCAGCAGGAGCGCCGGGACCGAGCCATCGCCCTGAAACTGCAGAGACAGTTCGACGCGGAGAACCAGGCCGCCGGCCGCCGGAGGAGCCCCCAGGTGTACTTCCTGCGCTCCTGGATGTCCAATCAGAACCGGAGGAGGCGGGGCCTGAGGAGATCTCGGCGAATCAACAAGAAGCACTAGAGAGGAGTCGTTTGACTCGCggcacaaagacagacagacagacagacagacagacagacagacaggaagagaggtTTCATATATATGCAAAGAAAGTTGTGAAAAAGTATGAATGTTTTTACACGAATGCAGACTCTAAATCATAGTCCACTGTCGAGGAAAAGGAACATTTCCTCCAAATATTGTTTGGAGATTGGAGagaggatccctacagagatagagcttttatttaaagagtaagatccttttagtttaacatgaaacagccccgaaatcaccatca

Function

GO: NA

KEGG:

id description
K20805 RNF169; E3 ubiquitin-protein ligase RNF169

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19951 lncRNA upstream 4662 6381723 ~ 6388400 (+) True G14863
TU19947 lncRNA upstream 5033 6386928 ~ 6388029 (+) False G14863
TU19903 lncRNA upstream 131840 6260871 ~ 6261222 (+) True G14841
TU19861 lncRNA upstream 202553 6164445 ~ 6190509 (+) True G14807
TU19862 lncRNA upstream 225650 6164445 ~ 6167412 (+) False G14807
TU19927 lncRNA downstream 10162 6414587 ~ 6415544 (+) False spcs2
TU19930 lncRNA downstream 10162 6414587 ~ 6415544 (+) False spcs2
TU19932 lncRNA downstream 10162 6414587 ~ 6417509 (+) True spcs2
TU19924 lncRNA downstream 11189 6415614 ~ 6416070 (+) False spcs2
TU19928 lncRNA downstream 11189 6415614 ~ 6416070 (+) False spcs2
XM_039786641.1 mRNA upstream 40061 6350475 ~ 6353001 (+) False LOC120549609
XM_039786631.1 mRNA upstream 40061 6352029 ~ 6353001 (+) True LOC120549609
XM_039779437.1 mRNA upstream 68652 6323484 ~ 6324410 (+) True LOC120545249
XM_039779425.1 mRNA upstream 102084 6290058 ~ 6290978 (+) True LOC120545240
XM_039779365.1 mRNA upstream 218552 6169219 ~ 6174510 (+) True LOC120545220
XM_039780329.1 mRNA downstream 3560 6407985 ~ 6414994 (+) False spcs2
XM_039792148.1 mRNA downstream 16088 6420513 ~ 6448328 (+) True abcg1
XM_039779645.1 mRNA downstream 106320 6510745 ~ 6520784 (+) True LOC120545383
XM_039821263.1 mRNA downstream 107752 6512177 ~ 6516516 (+) True LOC120572075
XM_039790925.1 mRNA downstream 120783 6525208 ~ 6526163 (+) True LOC120552698
TU19140 other upstream 871181 5510757 ~ 5521881 (+) True G14344
TU19135 other upstream 874913 5513801 ~ 5518149 (+) False G14344
TU18878 other upstream 1304390 5087824 ~ 5088672 (+) False G14187
TU18942 other upstream 1865685 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 1972240 4367603 ~ 4420822 (+) False G14246
TU19963 other downstream 3618 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 10162 6414587 ~ 6416070 (+) False spcs2
TU19934 other downstream 10162 6414587 ~ 6415544 (+) False spcs2
TU19935 other downstream 10162 6414587 ~ 6415544 (+) False spcs2
TU20165 other downstream 568420 6972845 ~ 6989396 (+) True G15019

Expression Profile