RNA id: TU19992


Basic Information

Item Value
RNA id TU19992
length 2788
lncRNA type sense_over
GC content 0.45
exon number 5
gene id G14880
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6378775 ~ 6417560 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagtacttttactgcagtagaGGATCATATATAAACTCAGTCAGGAAGTAGTTTGGGTAACACTCTCCATCTTTAATACGTTCAAACACAACTTACAgagaaataataatagaaataatACCAAACATTCAAAATCAAAGTTTCAGTCCACTTCCTGTCGTAAGGCATCAACACGCCACTGTTTAGcaacgttagcttagcataacgaTGCTAATCTGTCAACAGAATAaaagattaaactttaaacagtCGATGAAAATCTGCTAAATGTTTTCATTCTTATTTTACATTCCCCACAGCGGCCACATGGCCCCGCCCACCTGGAATActgcgctgtgattggtggaaaacGTCACGTCTGAAGGGCTTGaaattaataacaataaaaaaagtttttttaacataactGAAAGTACAAAATCTAACGAGTGGCGACGCAACCGAGAAACATGGAAggtttttttaaaagccttcAAACAGGAACTCAAACTgttattatgggatggatccagAAAGAACAACCTGAATCAACTCTTTTATAAAACGTTAATTTGTTAACGATGTCCAACGAGCTGCTGAACGCCGCGTCGCTGCCCGATGGGAGTCGCGCACGCGTCACTTTTGCGACAGGTAGCctccaagatgctaacggctttCTGTGCTAACGCACAAAGTCtaggagctaacgttagcaatctaaaaTGTGTCTGAAATGACTGCTGCTGCCGCTAGCTACAAGCTagcatcaaacacaacaaaggctgtcactggaatggtgttttgagctaacgttagcaatcagacaatcATAGACAGCCACAACGTttctgaaatgatttccatcttctgttacagtatgtaaagagaaacgtTTATTGTTTAGTGCGACTCCCATGGGGCAGTGACGGTCCTCCATCCTGTTGGAGTGTGTTGGCGTACACAGCGATGCTTGGGTTGTCTTCCACTCCACCACCGCGACACTTTGGGGTTTTTCAGGGTCcaaattttgacattttttggtcacttttatCCAAGTATTTGTCACGTTTTTTCTGAgctatttttttctaaaaaaaaaaaaaaaaaaaaaaaaaagctctttcCGACACGGTCACTTTGTTCAactttcttttatcattttattcttCCAATGCTATCAAACTGAACCCTTTAAATTCAGtcaaagtagtgaactgatttgtttttgtacCGGTTGAGAGCGTTGTGGTGAAATATCCACGTTAATATCcacgttatttatttttatttttttattaagttggttgaaagaaacccaaaattcAGATTTTTAGAAAATGCGTCAAATTTGAGAAGAGAGTTAATGTCAACGCTGCCACCGCAACTcagaaatatttgtttttccgtttttttttttgtctgtcacttttttcgtcattttacttctttttttttccatttaacattttttccaaaaaaaaaaaaaaaaaattctgtttctGAGACAAATCCTTCGATACGGGTCATGTAAACAGAATATTTAttgattaatttattaattacagGGACTGTGCATATTAATACACATTTCTGTCAGTATGCCAGCGTTAGCCAGTTACCCTTCTGTTTGGATCTGGAGAATAAAGTTTATTTTCTGACTGTAGTACTGTAGTATAGTACTGTAGTATAGTACTGTAGCATAGTACTGTAGCATAGTACTGTAGTATAGTACTGTAGCATAGTACTGTAGTATAGTACTGTACTGTCTGATGGAGACGGGTGTGATATTCGGGTATGATTCACGTTTTTAGAAAGCATTCTTTGGACGTGTTTACAACTCAGTCAGctcagctctgtgtgttgctatggttactaGCTCCGACTTTGACGTGATGAAGATTTATATAATCGCATATAAACACAAATCgccgagaaaaaaaaaaaaaaaaagctaattaaaaaaaaaatttaaaaatatgattAACTTTTATAATTCCATTTTCTGTTTTCCTGTGAATCTCTAAATTATAATCCTgtgatgaaaatgttttttaacaaTTCTGGGAATTAAGACCTCGAGGTGACATAACACCAGTTTATTGGTTGCATTTCATTTGGATGAAAACTTaacttcagagagagagagagagggagggagagagagagagagagagagagagagagacagagacagagagagagacagaaagagagacagaaagagagagtgagacagagagagagagagaaagagagagagagagacagagagagagagagagagagagagagagaaagagagagagacagagagagagagagagacagaaagagagagagagacagagagagacagagagagagacacagagagagacagagagagagagagagagagagacagagagagagagagacagagagagacagagatagagacacagagagagagagagagacagaaagagagagagacacagagagagagatcatgcgtggcagggcacctttaactgtgatggagtctctctctctctagtctGATTCTGGTGTTCTGAGATGAAACCAAACCGGCGCCCTGCCGTTAGGGTCCCAGCGGAGTTATTTGGTCTTCTTGTCCGAGGCCAGCGCGTCGTGCAGCTGAGAAACACACTTCTCAAACTGGTCCATGGCCAGCGTCCCGCTGTCGTCGAAGAACGCCGCCACAGACTTGGTGAACTCCGCTTCCCGACACTTCTTCGACTTTCCATCGATGAAGGAAACTCTCAGAGTGTACTGGTCATCGAaccaaacacacacacacactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19996 lncRNA downstream 42 6390172 ~ 6390572 (-) False G14882
TU19970 lncRNA downstream 27218 6363124 ~ 6363396 (-) True G14877
TU19967 lncRNA downstream 28882 6360221 ~ 6361732 (-) False pgm2l1
TU19909 lncRNA downstream 77550 6260858 ~ 6313064 (-) True G14846
TU19902 lncRNA downstream 140189 6249908 ~ 6250425 (-) True G14840
TU20044 lncRNA upstream 39838 6457398 ~ 6457867 (-) True G14923
TU20046 lncRNA upstream 59214 6476774 ~ 6477418 (-) True G14925
TU20058 lncRNA upstream 148977 6566537 ~ 6566808 (-) True G14937
TU20061 lncRNA upstream 160678 6578238 ~ 6578461 (-) True G14940
TU20064 lncRNA upstream 191397 6608957 ~ 6609212 (-) True G14943
XM_039788155.1 mRNA downstream 10158 6359243 ~ 6380456 (-) True pgm2l1
XM_039779414.1 mRNA downstream 113769 6275892 ~ 6276845 (-) True LOC120545232
XM_039779067.1 mRNA downstream 418698 5970990 ~ 5971916 (-) True LOC120545072
XM_039779057.1 mRNA downstream 426744 5962920 ~ 5963870 (-) True LOC120545063
XM_039778991.1 mRNA downstream 441751 5939672 ~ 5948863 (-) True LOC120545043
XM_039792160.1 mRNA upstream 24212 6441772 ~ 6442698 (-) True LOC120553580
XM_039779510.1 mRNA upstream 49288 6466848 ~ 6467780 (-) True LOC120545295
XM_039779548.1 mRNA upstream 65431 6482991 ~ 6484025 (-) True LOC120545304
XM_039779658.1 mRNA upstream 128531 6546091 ~ 6547017 (-) True LOC120545387
XM_039779852.1 mRNA upstream 328620 6746180 ~ 6751981 (-) True LOC120545488
TU19916 other downstream 87802 6302349 ~ 6302812 (-) True G14853
TU19803 other downstream 684637 5703387 ~ 5705977 (-) True G14754
TU19757 other downstream 856787 5510716 ~ 5533827 (-) False G14722
TU19742 other downstream 887184 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 1085245 5214769 ~ 5305369 (-) True G14553
TU20278 other upstream 603423 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 603423 7020983 ~ 7032467 (-) False atg16l2
XR_005638460.1 other upstream 624522 7042082 ~ 7042373 (-) True LOC120554469
TU20319 other upstream 684806 7102366 ~ 7104090 (-) True G15110
TU20324 other upstream 694139 7111699 ~ 7113608 (-) True G15114

Expression Profile