RNA id: TU20007


Basic Information

Item Value
RNA id TU20007
length 667
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G14890
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6403857 ~ 6418886 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagtttggtgatggtgatttcggggctgtttcatgttaaactaaaaggatcttactctttaactaaaagctctatctctgtagggatcctctCTCCAATCTCCAAACAATATTTGGAGGAAATGTTCCTTTTCCTCGACAGTGGACTATGATTTAGAGTCTGCATTCGTGTAAAAACATTCATACTTTTTCACAACTTTCTTTGCATATATATGAAacctctcttcctgtctgtctgtctgtctgtctgtctgtctgtctgtctttgtgccGCGAGTCAAACGACTCCTCTCTAGTGCTTCTTGTTGATTCGCCGAGATCTCCTCAGGCCCCGCCTCCTCCGGTTCTGATTGGACATCCAGGAGCGCAGGAAGTACACCTGGGGGCTCCTCCGGCGGCCGGCGGCCTGGTTCTCCGCGTCGAACTGTCTCTGCAGTTTCAGGGCGATGGCTCGGTCCCGGCGCTCCTGCTGCGCCCGCCCGCCGGCGTACCGGTCCTCGTAGACGTCCTGGCCGGCCGAGCGGCTCCTCCTCCGCTCAGAGTCCCGCTCCGCGTCCAGGTGTTTGGTCTTCTGCTCC

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19998 lncRNA downstream 521 6390172 ~ 6403336 (-) False G14882
TU19995 lncRNA downstream 1044 6401345 ~ 6402813 (-) True G14882
TU19999 lncRNA downstream 1044 6401900 ~ 6402813 (-) False G14882
TU19996 lncRNA downstream 13285 6390172 ~ 6390572 (-) False G14882
TU19970 lncRNA downstream 40461 6363124 ~ 6363396 (-) True G14877
TU20044 lncRNA upstream 38512 6457398 ~ 6457867 (-) True G14923
TU20046 lncRNA upstream 57888 6476774 ~ 6477418 (-) True G14925
TU20058 lncRNA upstream 147651 6566537 ~ 6566808 (-) True G14937
TU20061 lncRNA upstream 159352 6578238 ~ 6578461 (-) True G14940
TU20064 lncRNA upstream 190071 6608957 ~ 6609212 (-) True G14943
XM_039780301.1 mRNA downstream 10633 6387490 ~ 6393224 (-) False lipt2
XM_039780307.1 mRNA downstream 10646 6387490 ~ 6393211 (-) False lipt2
XM_039780315.1 mRNA downstream 10646 6387490 ~ 6393211 (-) False lipt2
XM_039780295.1 mRNA downstream 10646 6387490 ~ 6393211 (-) True lipt2
XM_039788155.1 mRNA downstream 23401 6359243 ~ 6380456 (-) True pgm2l1
XM_039792160.1 mRNA upstream 22886 6441772 ~ 6442698 (-) True LOC120553580
XM_039779510.1 mRNA upstream 47962 6466848 ~ 6467780 (-) True LOC120545295
XM_039779548.1 mRNA upstream 64105 6482991 ~ 6484025 (-) True LOC120545304
XM_039779658.1 mRNA upstream 127205 6546091 ~ 6547017 (-) True LOC120545387
XM_039779852.1 mRNA upstream 327294 6746180 ~ 6751981 (-) True LOC120545488
TU19916 other downstream 101045 6302349 ~ 6302812 (-) True G14853
TU19803 other downstream 697880 5703387 ~ 5705977 (-) True G14754
TU19757 other downstream 870030 5510716 ~ 5533827 (-) False G14722
TU19742 other downstream 900427 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 1098488 5214769 ~ 5305369 (-) True G14553
TU20278 other upstream 602097 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 602097 7020983 ~ 7032467 (-) False atg16l2
XR_005638460.1 other upstream 623196 7042082 ~ 7042373 (-) True LOC120554469
TU20319 other upstream 683480 7102366 ~ 7104090 (-) True G15110
TU20324 other upstream 692813 7111699 ~ 7113608 (-) True G15114

Expression Profile