RNA id: TU20049


Basic Information

Item Value
RNA id TU20049
length 1404
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G14928
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6508571 ~ 6509974 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgccttctggctcaactctcttttcgtcacaacggtgtgaTAAATTGAATGTTATACCGCCCCTGCTGTGCctattctccgaccaatctccaactccattgtcccctcacttgcgaacaagaccccaaggtatttgaactccttcacttggggtaaggactcattccctacctggagtagtcACTCCATCGGTTTTCTGCTGAGacccatggcctcagatttaggctgatcctcatcccagccgcttcacactcggctgcgaaccaatccagtgagtgctgaaggtcacaggccgatgatgccatgaggaccacatcatctgcaaagagcagtgatgagatccccagcccactgaactgcaacccctccccactccgactacgcctcgatatcctgtccataaatataacaaacaggattggcgacaaagcgcagccctggcggaggccaaccctcacctgataCTTGCTCCTTCCACTGCACTATTATGTCCTaagttgaggtcaacagcgtCCCATCCTTAATGTACGCATCTTGGATGGTTCcctgcttccccctcctgaggtgccaaacggttttccagaagcaccttggtgcagaccgaaagtccttctccctGTAACTGTCTTTCCGAGTCCTTTAGGATagcatatcccggaaagactccttcagtcggatggcttccctgaccaccggtgtccatcATGGTGTTTGTGGGTTACCGTCCCttgaccctaagaccacagccccccgccgcagcttcagcaatggaaactttgaacattgtccacttgggttcaatgcccccagcctccacagggatgcacgaaaagctccacctgaggtgtgagttgaaagtctgtcggacaggggcctcctccggactttcccaatttacccgcactacccgtttgggcttaccaggtctgtccagactcTTCCcacaccccctgacccaactaaccagcagatggtgatcggttgagggctccgcccctctctttaCCCGAGTCTCCAAAACATACAACCTCAGATCAGAataaacgattataaaatcgatcattgaccttcggcctagggtgctctggcaccaagtacacttatgagcatccctatgttcagGTTCTTAAGGACACAGAAACAtttccaccacgataaggtgatggttccctgCATCAATGAATACAAAGTTATATGCATAGGGCCTAGTTTGGGGGGAAATaattgagggaacatagggctgaccccggtCTGACAGCCACATTCTGCTTcatgatgaatcatgcacaGCTGGAAAGAGATAATGGGAGTACTTTGAAATTGTcacgatttcatgtgacaaaccAAAAATGATGATGAATAAAATATGTCTCACAATTGCTGCTTGAAAAATTACTTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20037 lncRNA upstream 13921 6494388 ~ 6494650 (+) True G14917
TU20028 lncRNA upstream 31425 6476674 ~ 6477146 (+) True G14908
TU20027 lncRNA upstream 34802 6473510 ~ 6473769 (+) True G14907
TU20024 lncRNA upstream 42316 6465508 ~ 6466255 (+) True G14904
TU20022 lncRNA upstream 44750 6458942 ~ 6463821 (+) True G14902
TU20051 lncRNA downstream 1161 6511135 ~ 6511886 (+) True G14930
TU20060 lncRNA downstream 68248 6578222 ~ 6578453 (+) True G14939
XR_005641380.1 lncRNA downstream 180057 6690031 ~ 6690891 (+) True LOC120572178
TU20157 lncRNA downstream 434348 6944322 ~ 6991913 (+) True G15012
TU20167 lncRNA downstream 467825 6977799 ~ 6978105 (+) True G15021
XM_039792148.1 mRNA upstream 60243 6420513 ~ 6448328 (+) True abcg1
XM_039780329.1 mRNA upstream 93577 6407985 ~ 6414994 (+) False spcs2
XM_039780287.1 mRNA upstream 104146 6393062 ~ 6404425 (+) True rnf169
XM_039786641.1 mRNA upstream 155570 6350475 ~ 6353001 (+) False LOC120549609
XM_039779645.1 mRNA downstream 771 6510745 ~ 6520784 (+) True LOC120545383
XM_039821263.1 mRNA downstream 2203 6512177 ~ 6516516 (+) True LOC120572075
XM_039790925.1 mRNA downstream 15234 6525208 ~ 6526163 (+) True LOC120552698
XM_039822208.1 mRNA downstream 24495 6534469 ~ 6535401 (+) True LOC120572775
XM_039790945.1 mRNA downstream 31389 6541363 ~ 6542380 (+) True LOC120552719
TU19929 other upstream 92501 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 93027 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 93027 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 95196 6408043 ~ 6413375 (+) False spcs2
TU19140 other upstream 986690 5510757 ~ 5521881 (+) True G14344
TU20165 other downstream 462871 6972845 ~ 6989396 (+) True G15019
TU20402 other downstream 888127 7398101 ~ 7399141 (+) True G15173
unassigned_transcript_83 other downstream 901856 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 981391 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 1316636 7826610 ~ 7827290 (+) False LOC120543808

Expression Profile