Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU20051 |
| length | 752 |
| lncRNA type | intronic |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G14930 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053113.1 |
| NCBI id | CM020910.1 |
| chromosome length | 48524041 |
| location | 6511135 ~ 6511886 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0050877 | nervous system process | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0003008 | system process | biological_process |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU20049 | lncRNA | upstream | 1161 | 6508571 ~ 6509974 (+) | True | G14928 |
| TU20037 | lncRNA | upstream | 16485 | 6494388 ~ 6494650 (+) | True | G14917 |
| TU20028 | lncRNA | upstream | 33989 | 6476674 ~ 6477146 (+) | True | G14908 |
| TU20027 | lncRNA | upstream | 37366 | 6473510 ~ 6473769 (+) | True | G14907 |
| TU20024 | lncRNA | upstream | 44880 | 6465508 ~ 6466255 (+) | True | G14904 |
| TU20060 | lncRNA | downstream | 66336 | 6578222 ~ 6578453 (+) | True | G14939 |
| XR_005641380.1 | lncRNA | downstream | 178145 | 6690031 ~ 6690891 (+) | True | LOC120572178 |
| TU20157 | lncRNA | downstream | 432436 | 6944322 ~ 6991913 (+) | True | G15012 |
| TU20167 | lncRNA | downstream | 465913 | 6977799 ~ 6978105 (+) | True | G15021 |
| TU20179 | lncRNA | downstream | 504909 | 7016795 ~ 7017311 (+) | True | G15032 |
| XM_039792148.1 | mRNA | upstream | 62807 | 6420513 ~ 6448328 (+) | True | abcg1 |
| XM_039780329.1 | mRNA | upstream | 96141 | 6407985 ~ 6414994 (+) | False | spcs2 |
| XM_039780287.1 | mRNA | upstream | 106710 | 6393062 ~ 6404425 (+) | True | rnf169 |
| XM_039786641.1 | mRNA | upstream | 158134 | 6350475 ~ 6353001 (+) | False | LOC120549609 |
| XM_039821263.1 | mRNA | downstream | 291 | 6512177 ~ 6516516 (+) | True | LOC120572075 |
| XM_039790925.1 | mRNA | downstream | 13322 | 6525208 ~ 6526163 (+) | True | LOC120552698 |
| XM_039822208.1 | mRNA | downstream | 22583 | 6534469 ~ 6535401 (+) | True | LOC120572775 |
| XM_039790945.1 | mRNA | downstream | 29477 | 6541363 ~ 6542380 (+) | True | LOC120552719 |
| XM_039779672.1 | mRNA | downstream | 38804 | 6550690 ~ 6551630 (+) | True | LOC120545393 |
| TU19929 | other | upstream | 95065 | 6414587 ~ 6416070 (+) | False | spcs2 |
| TU19934 | other | upstream | 95591 | 6414587 ~ 6415544 (+) | False | spcs2 |
| TU19935 | other | upstream | 95591 | 6414587 ~ 6415544 (+) | False | spcs2 |
| TU19963 | other | upstream | 97760 | 6408043 ~ 6413375 (+) | False | spcs2 |
| TU19140 | other | upstream | 989254 | 5510757 ~ 5521881 (+) | True | G14344 |
| TU20165 | other | downstream | 460959 | 6972845 ~ 6989396 (+) | True | G15019 |
| TU20402 | other | downstream | 886215 | 7398101 ~ 7399141 (+) | True | G15173 |
| unassigned_transcript_83 | other | downstream | 899944 | 7411830 ~ 7411912 (+) | True | trnal-cag |
| TU20486 | other | downstream | 979479 | 7491365 ~ 7492057 (+) | True | G15234 |
| TU20573 | other | downstream | 1314724 | 7826610 ~ 7827290 (+) | False | LOC120543808 |
