RNA id: TU20060


Basic Information

Item Value
RNA id TU20060
length 232
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G14939
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6578222 ~ 6578453 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtaaaggtcccatggcatgaaaatgtcactttatgaggttttttaacattaatatgagttcccccagcctgcctatggtcccccagtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcagatgggccaatcaggaatcttgctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20051 lncRNA upstream 66336 6511135 ~ 6511886 (+) True G14930
TU20049 lncRNA upstream 68248 6508571 ~ 6509974 (+) True G14928
TU20037 lncRNA upstream 83572 6494388 ~ 6494650 (+) True G14917
TU20028 lncRNA upstream 101076 6476674 ~ 6477146 (+) True G14908
TU20027 lncRNA upstream 104453 6473510 ~ 6473769 (+) True G14907
XR_005641380.1 lncRNA downstream 111578 6690031 ~ 6690891 (+) True LOC120572178
TU20157 lncRNA downstream 365869 6944322 ~ 6991913 (+) True G15012
TU20167 lncRNA downstream 399346 6977799 ~ 6978105 (+) True G15021
TU20179 lncRNA downstream 438342 7016795 ~ 7017311 (+) True G15032
TU20202 lncRNA downstream 473733 7052186 ~ 7053965 (+) True G15050
XM_039779672.1 mRNA upstream 26592 6550690 ~ 6551630 (+) True LOC120545393
XM_039790945.1 mRNA upstream 35842 6541363 ~ 6542380 (+) True LOC120552719
XM_039822208.1 mRNA upstream 42821 6534469 ~ 6535401 (+) True LOC120572775
XM_039790925.1 mRNA upstream 52059 6525208 ~ 6526163 (+) True LOC120552698
XM_039779645.1 mRNA upstream 57438 6510745 ~ 6520784 (+) True LOC120545383
XM_039821625.1 mRNA downstream 11283 6589736 ~ 6590668 (+) True LOC120572346
XM_039779698.1 mRNA downstream 21306 6599759 ~ 6607610 (+) True LOC120545404
XM_039779709.1 mRNA downstream 33859 6612312 ~ 6613238 (+) True LOC120545410
XM_039779723.1 mRNA downstream 38344 6616797 ~ 6617723 (+) True LOC120545416
XM_039818626.1 mRNA downstream 56146 6634599 ~ 6635525 (+) True LOC120570331
TU19929 other upstream 162152 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 162678 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 162678 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 164847 6408043 ~ 6413375 (+) False spcs2
TU19140 other upstream 1056341 5510757 ~ 5521881 (+) True G14344
TU20165 other downstream 394392 6972845 ~ 6989396 (+) True G15019
TU20402 other downstream 819648 7398101 ~ 7399141 (+) True G15173
unassigned_transcript_83 other downstream 833377 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 912912 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 1248157 7826610 ~ 7827290 (+) False LOC120543808

Expression Profile