RNA id: TU20157


Basic Information

Item Value
RNA id TU20157
length 1134
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G15012
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6944322 ~ 6991913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTTTACAGCGTGTTTCCTGCAGCGAGCATTAAGATGCATTAAGGAAGAGACTCCGGAGGCGAGGCCATCACGGATAATGCTTCAGCAGCGGAAAGAAAAAGCTCTCTGCTTCCTGACAGTTTCTAAAGAGACCGTGAAACACATCAGAACcaaggagggagagacaaagagggagggagagagggagggagagagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagaccgacagaccgacagacagacacacaggaatgTTTTCATGTTGTGGTTGCAGGATTCCCTTCATTTAGTTTGTACAGTTAATAAAAAAGCTTAATGTTCAGGATTATTATGGTCTGTATTAAAGCTTCCCAGTTATGGAATATAAAATGCAAACAAGTCACCGAGCGGAAAGAGTCACATCCCTTTTGTCCAATCAACAGATAGCTTAAAAAaaccagaacacacacacacgttccctTTGAGCGCTCTCAGAGCAGTTAGTTTACGTTAAGGCGAGGCGTGTTTTCGTGGGGTTGTTGCTGTGACAACAtgactagagatgttccgataccgccTAAAATGCTTGTATCGCTATCGGAAAGTACCGATCCGACACCACGTCATTTAGCCCTGaacaaaatctactttaaaagtagtttatttaaagtTCGTTTCCGTTCGGACtcgctgtcaaactggataatacaacaacaacaaagacagCAATtacatcacatccatacagggataggaGTTCATTCACATTTTAACCAATGCTTTCCATGACTATGTATTCCTGAAAATGTAGATTATGTATATCCAAAAATCACACAAGTAGGCACACTTACGTTCCCCACACGCAAATTTGGCTGCCGACTGACTGTCAGGAAGCGTTGGCTGACATCCTCGCACGATGTAGAAGACTAGTGGGAGTTTGGGACTTTCCACGCCCACGGTACCTCGGCCCTTAATGCGTCTCGTCTAGTAACACTGGAGATGGTCCCTCGTCTCGTGCCTGGCGTCTGACTCGTGATGGAGGAACCTGCAATCGGCGTGACGTTGGTCGATGTCGATGGAGGAAAGAAGGagctagtgatggtcaaataaCACACCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641380.1 lncRNA upstream 253431 6690031 ~ 6690891 (+) True LOC120572178
TU20060 lncRNA upstream 365869 6578222 ~ 6578453 (+) True G14939
TU20051 lncRNA upstream 432436 6511135 ~ 6511886 (+) True G14930
TU20049 lncRNA upstream 434348 6508571 ~ 6509974 (+) True G14928
TU20037 lncRNA upstream 449672 6494388 ~ 6494650 (+) True G14917
TU20179 lncRNA downstream 24882 7016795 ~ 7017311 (+) True G15032
TU20202 lncRNA downstream 60273 7052186 ~ 7053965 (+) True G15050
TU20174 lncRNA downstream 101215 7093128 ~ 7093466 (+) True G15028
TU20215 lncRNA downstream 104548 7096461 ~ 7099577 (+) True G15063
TU20216 lncRNA downstream 104548 7096461 ~ 7099577 (+) False G15063
XM_039777245.1 mRNA upstream 2888 6935046 ~ 6941434 (+) True or55e1
XM_039776759.1 mRNA upstream 14737 6913684 ~ 6929585 (+) True LOC120543617
XM_039780036.1 mRNA upstream 32832 6910543 ~ 6911490 (+) True LOC120545568
XM_039779950.1 mRNA upstream 44740 6898638 ~ 6899582 (+) True LOC120545541
XM_039779942.1 mRNA upstream 49825 6893550 ~ 6894497 (+) True LOC120545533
XM_039780137.1 mRNA downstream 373883 7365796 ~ 7396634 (+) True LOC120545619
XM_039777404.1 mRNA downstream 439030 7430943 ~ 7440995 (+) False LOC120543955
XM_039777395.1 mRNA downstream 439090 7431003 ~ 7440997 (+) True LOC120543955
XM_039776913.1 mRNA downstream 543186 7535099 ~ 7570718 (+) True ece2b
XM_039776922.1 mRNA downstream 558852 7550765 ~ 7570718 (+) False ece2b
TU19929 other upstream 528252 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 528778 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 528778 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 530947 6408043 ~ 6413375 (+) False spcs2
TU19140 other upstream 1422441 5510757 ~ 5521881 (+) True G14344
TU20402 other downstream 406188 7398101 ~ 7399141 (+) True G15173
unassigned_transcript_83 other downstream 419917 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 499452 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 834697 7826610 ~ 7827290 (+) False LOC120543808
TU20559 other downstream 841410 7833323 ~ 7843657 (+) False rffl

Expression Profile