RNA id: TU20174


Basic Information

Item Value
RNA id TU20174
length 253
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G15028
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7093128 ~ 7093466 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtttgtgtctgtctctctctctctctctgcgtgtgtgtgtctctctgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20202 lncRNA upstream 39163 7052186 ~ 7053965 (+) True G15050
TU20179 lncRNA upstream 75817 7016795 ~ 7017311 (+) True G15032
TU20157 lncRNA upstream 101215 6944322 ~ 6991913 (+) True G15012
TU20167 lncRNA upstream 115023 6977799 ~ 6978105 (+) True G15021
XR_005641380.1 lncRNA upstream 402237 6690031 ~ 6690891 (+) True LOC120572178
TU20215 lncRNA downstream 2995 7096461 ~ 7099577 (+) True G15063
TU20216 lncRNA downstream 2995 7096461 ~ 7099577 (+) False G15063
TU20218 lncRNA downstream 2995 7096461 ~ 7099577 (+) False G15063
TU20334 lncRNA downstream 45111 7138577 ~ 7138781 (+) True G15120
TU20336 lncRNA downstream 48409 7141875 ~ 7142167 (+) True G15122
XM_039777245.1 mRNA upstream 151694 6935046 ~ 6941434 (+) True or55e1
XM_039776759.1 mRNA upstream 163543 6913684 ~ 6929585 (+) True LOC120543617
XM_039780036.1 mRNA upstream 181638 6910543 ~ 6911490 (+) True LOC120545568
XM_039779950.1 mRNA upstream 193546 6898638 ~ 6899582 (+) True LOC120545541
XM_039779942.1 mRNA upstream 198631 6893550 ~ 6894497 (+) True LOC120545533
XM_039780137.1 mRNA downstream 272330 7365796 ~ 7396634 (+) True LOC120545619
XM_039777404.1 mRNA downstream 337477 7430943 ~ 7440995 (+) False LOC120543955
XM_039777395.1 mRNA downstream 337537 7431003 ~ 7440997 (+) True LOC120543955
XM_039776913.1 mRNA downstream 441633 7535099 ~ 7570718 (+) True ece2b
XM_039776922.1 mRNA downstream 457299 7550765 ~ 7570718 (+) False ece2b
TU20165 other upstream 103732 6972845 ~ 6989396 (+) True G15019
TU19929 other upstream 677058 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 677584 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 677584 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 679753 6408043 ~ 6413375 (+) False spcs2
TU20402 other downstream 304635 7398101 ~ 7399141 (+) True G15173
unassigned_transcript_83 other downstream 318364 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 397899 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 733144 7826610 ~ 7827290 (+) False LOC120543808
TU20559 other downstream 739857 7833323 ~ 7843657 (+) False rffl

Expression Profile