RNA id: TU20278


Basic Information

Item Value
RNA id TU20278
length 1247
RNA type TUCP
GC content 0.62
exon number 9
gene id atg16l2
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7020970 ~ 7032540 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaacatGGCGGCGGCTGGAAGACCCGGAGCTTCACCACGGAGCTTCGTGTGACACCAGGCCGGTCTGTGAGCGACTGTCAGCGGGGAAACGGCACCGAGAAGCGGCCCGCGCTGCGGACTTCATGGCTGCTCTGACAGCAACACGGTTGAAGCTAGagaggggatacagctacggccgCGAGAGTTacgtttagacaccaaaacgactagttaagtttggGGAAAAAAGATCGTGGCTTTGGTTAAAACACTCgtgcgtttcctgggtgaaagtattaaaaTATATCAGCCGAGATTTTGCGTAGCTTCCGGCCGttgctgtatcccttctagcccACCCGCACAGTCATGACCGATTCAGCGGGAGGGTCGCAGCGCTGCGCCCGGGTCGGGGCTCCGGGACGCGGCGGCGGCGGCAGGTCCGCCTCGGAGACCCGCTGGAGGAGACACATCGTCGGGCAGCTGAAGCACCGAGACCTGAGCCAGCACGCCAAGTTCCAGGATCTGATCCGCTTCTACACTCAGCTGCTGGAGAAGAGCAGCCTGACCAAAGGACTCCTGAGCCGCTCcgccagGCGTCCCTCCGCTGACAGCAGCTGCTCCGTCAGCTCTCTGAAGAAAACTACGGGAGAGCTGGCCTATCGGGTGctggagctgcagcagcagattAAGGTCCGAGAAAGGCTTCTGGACGAGCAGCATGCCAGACTGCTGGAGGAGGAGCGCCGGCTGGAGGGGGCGCTGGATGCGCGGCAGGCGCTGCGGGGGCGGGTGGAGCAGGTTCAGGCGGACAACGGGACGCTGAAGGCGGAGTACGACGCGTTGCTGGAGCGACAGCGAGCGGCGGagacgaggctgagagacgagACGCTGAGAGAGGGGCGCCTGCTGCAGGACGTCATCCAGCTCAAACAGCAGGCCGCAGAGCGCCTGAACAGCCGCAACGAACGCAAGTCCAGagctCGAGAAGCGAAGCTGCAGGAGCTGCAGGCTGCTgccaggtcaaaggtcaccatGGACAGTTGTCGTCCATCGTCTCCGGAGACGGCCGCGACGCCGGCCAGAGGCCACACCAGACTCTTCAGaTCTGCGTCAGCGACGTCTCCCAGGATCCTCTCCTCCTTCAGAGAGCTGTTTGACAGGAAGAGGCGTGGCCACTCGGTCTGCAGCCCGGAGGAGGAGCTGGTGTTTCCTGTACGAATCTGCCTCTCAGCCAGAGTCCCGGCCAGAGCGCTACAAGTCCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20284 lncRNA downstream 3581 7016296 ~ 7017402 (-) True G15091
TU20267 lncRNA downstream 23592 6996131 ~ 6997391 (-) True G15083
TU20238 lncRNA downstream 29065 6887216 ~ 6991918 (-) False G15074
TU20236 lncRNA downstream 29065 6944360 ~ 6991918 (-) True G15074
TU20245 lncRNA downstream 30440 6972824 ~ 6990543 (-) True G15077
TU20277 lncRNA upstream 1897 7034364 ~ 7034716 (-) True G15086
TU20288 lncRNA upstream 2606 7035073 ~ 7035526 (-) True G15094
TU20296 lncRNA upstream 4211 7036678 ~ 7037528 (-) True G15097
TU20302 lncRNA upstream 19615 7052082 ~ 7053964 (-) True G15102
TU20303 lncRNA upstream 21693 7054160 ~ 7058706 (-) True G15103
XM_039777112.1 mRNA downstream 52998 6942559 ~ 6967985 (-) False arrb1
XM_039779930.1 mRNA downstream 136507 6882361 ~ 6884476 (-) True LOC120545524
XM_039779906.1 mRNA downstream 198753 6820147 ~ 6822230 (-) True LOC120545509
XM_039779893.1 mRNA downstream 240879 6779175 ~ 6780104 (-) True LOC120545506
XM_039779852.1 mRNA downstream 269002 6746180 ~ 6751981 (-) True LOC120545488
XM_039777005.1 mRNA upstream 3655 7036122 ~ 7059696 (-) True wdr62
XM_039776961.1 mRNA upstream 85452 7117919 ~ 7126398 (-) True LOC120543742
XM_039777444.1 mRNA upstream 97322 7129789 ~ 7136162 (-) False rpl35a
XM_039776743.1 mRNA upstream 110262 7142729 ~ 7199539 (-) True LOC120543599
XM_039777541.1 mRNA upstream 230507 7262974 ~ 7267714 (-) True LOC120544032
TU19916 other downstream 718171 6302349 ~ 6302812 (-) True G14853
TU19803 other downstream 1315006 5703387 ~ 5705977 (-) True G14754
TU19757 other downstream 1487156 5510716 ~ 5533827 (-) False G14722
TU19742 other downstream 1517553 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 1715614 5214769 ~ 5305369 (-) True G14553
XR_005638460.1 other upstream 9615 7042082 ~ 7042373 (-) True LOC120554469
TU20319 other upstream 69899 7102366 ~ 7104090 (-) True G15110
TU20324 other upstream 79232 7111699 ~ 7113608 (-) True G15114
TU20329 other upstream 82252 7114719 ~ 7120041 (-) False LOC120543742
TU20310 other upstream 97159 7129626 ~ 7136104 (-) True rpl35a

Expression Profile