RNA id: TU20318


Basic Information

Item Value
RNA id TU20318
length 2831
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G15109
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7096459 ~ 7102085 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGAGACCATCAGGACCTCCTTCCAGCACTGCACCACCCTGACCATCGCTCACCGGCTCACCTCGGTGCTCACCGCTGATAGGGTCATGGTGCTCAACCAGGGACAGGTGGCGGAGTTTGACGAGCCGTCCAAGCTGCTGGCCAATGAGAACTCTCGGCTGCGCTCCATGCTGGTCGCCATGGAGACCAAGGTGTCTGTAcgaggatgaagaagaggatGAAGATGTACGTGTTCCTGGACTGATCCGAGATCTGAGATCAGAGATCAGAGCTGACAGAATCTAAATCACTTTTGAGTCTGAACACAGAGGGGAAGCCCCGCCCCTTCCTGTgtttaagccccgcccccttcctCCGTAATACCTGCTACGGCCAATAGAGGGCTCTGGGTCAGAATCATGCTGGAACAAACCATCTGGGGGAGTTTTTCGGGGGTCGACAGACTCTAAATGATTACTTTTCTGTCATTAGAGGATCGGTCATCTGGGAGGAAATACTGAGTGTTTTATAAACCTAAAGATATAAAGAAATACTGAAGTTACGTCATAAACATATAAGCATATTAAATAACCTCCAGTTAACTGTAAACACGTTAAATTAGAAGTCAGGCTGTCCTTAAGTCTAGAAACAAATGGTTTGGCTTAAAATCACACGTTTTAGTCGCCTTTTTTCAgactttattgtcacttttttcaacattttgtcgcttttttttgtCGTTTATGTCACTTTATTTAAAAACTTTAGTTGTTTTGCTGCCAgtatataaacataaataaagatCGTATTTATATTTGATGCCTAAACACAGTCCTGTGAGAGTGTTGCCATGGTTTTATTAACCTAAATGCTGGAAGATCTCCTGAACATTTCAACATGAAGATGTAAATAGAACATATATATTCTTCTGCTTGgtttggttttattgttttaacttTAATCTTCAGATTAGATGAGTTATTAGCTGTCAGGACTTCTGACTTCTTCCTGTTTGTCCTTACGTCTCGTAACCATGGAAACACGGGATCTATGGACACAGAATTATCCGCAGAAttcatacaaaataaaagcccctaATGTCTCATAACTGATGGGTTGaaccaccaaaataaaagcccctaATGTCTCATAACTCATGGATTGtaccaccaaaataaaagcccctaATATCTCATAATTGATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAACTAATGGATTGaaccaccaaaataaaagcccctaATTTCTCATAACTGATGGGTTGaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGGTTGaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATTGtaccaccaaaataaaagcccctaATGTCTCATAACTAATAGATTGAACCACAAAAATAAAAGCCCCTAATGTCTCATAACTGATGGATAAaaccaccaaaataaaagcccctaATGTCTCATAACTAATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATAAaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATAAAACCACCAAAATAATAGCCCCTACTGTCTCATAATTGATGGATTGaaccaccaaaataaaagcccctaATATCTCATAACTGATGGATAAAACCACCAAAATAATAGCCCCTACTGTCTCATAATTGATGGATTGAACCACCAAAATAAAAGACCCTAATGTCTCATAACTGATGGATAAAACCACCAAAATAATAGCCCCTACTGTCTCATAATTGATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAATTGATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATTGaaccaccaaaataaaagctacTAATGTCTCATAACTGATGGATTTaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAACTGATggataaaaacaccaaaataaaagcccctaCTGTCTCATAACTGATGGATAGaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATAAaaccaccaaaataaaagctacTAATGTCTCATAACTGATGGATTGtaccaccaaaataaaagcccccaaTGTCTCATAATTGATGGGTTGTActgccaaaataaaagcccctaATGCCTCATAACTGATGGATTGtaccaccaaaataaaagctcctAATATCTCATAACTGATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATAAaaccaccaaaataaaagcccttaATGTCTCATAATTGATGGATTGaaccaccaaaataaaagctcctAATGTCTCATAACTGATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATAAaaccaccaaaataaaagcccctaATGTCTCATAACTGATGGATAAaaccaccaaaataaaagcccctaATGTCTCATAATTGATGGATTGaaccaccaaaataaaagctcctAATGTCTCATAACTGATGGATTGaaccaccaaaataaaagcccctaATGTCTCATAATTGATGGATTGaaccaccaaaataaaagctacTATTGTCTCATAACTGATGGATGaaccaccaaaataaaagctacTAATGTCTCatacaccaaaataaaagcctgttagTACTAGATGAACAGAGCAGACAGGAAGTGCAGCATGACGTCATATCTGCCTTGTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20311 lncRNA downstream 2123 7082808 ~ 7094336 (-) True G15108
TU20305 lncRNA downstream 33372 7062501 ~ 7063087 (-) True G15104
TU20303 lncRNA downstream 37753 7054160 ~ 7058706 (-) True G15103
TU20302 lncRNA downstream 42495 7052082 ~ 7053964 (-) True G15102
TU20296 lncRNA downstream 58931 7036678 ~ 7037528 (-) True G15097
TU20320 lncRNA upstream 2752 7104837 ~ 7105133 (-) True G15111
TU20322 lncRNA upstream 7960 7110045 ~ 7110696 (-) True G15112
TU20432 lncRNA upstream 39511 7141596 ~ 7142192 (-) True G15190
TU20433 lncRNA upstream 53435 7155520 ~ 7156639 (-) False LOC120543599
XR_005636458.1 lncRNA upstream 105655 7207740 ~ 7211366 (-) True LOC120544114
XM_039777005.1 mRNA downstream 36763 7036122 ~ 7059696 (-) True wdr62
XM_039777279.1 mRNA downstream 63919 7020970 ~ 7032540 (-) False atg16l2
XM_039776961.1 mRNA upstream 15834 7117919 ~ 7126398 (-) True LOC120543742
XM_039777444.1 mRNA upstream 27704 7129789 ~ 7136162 (-) False rpl35a
XM_039776743.1 mRNA upstream 40644 7142729 ~ 7199539 (-) True LOC120543599
XM_039777541.1 mRNA upstream 160889 7262974 ~ 7267714 (-) True LOC120544032
XM_039780074.1 mRNA upstream 218676 7320761 ~ 7343893 (-) False lrch3
XR_005638460.1 other downstream 54086 7042082 ~ 7042373 (-) True LOC120554469
TU20278 other downstream 63992 7020983 ~ 7032467 (-) False atg16l2
TU20279 other downstream 63992 7020983 ~ 7032467 (-) False atg16l2
TU19916 other downstream 793647 6302349 ~ 6302812 (-) True G14853
TU19803 other downstream 1390482 5703387 ~ 5705977 (-) True G14754
TU20319 other upstream 281 7102366 ~ 7104090 (-) True G15110
TU20324 other upstream 9614 7111699 ~ 7113608 (-) True G15114
TU20329 other upstream 12634 7114719 ~ 7120041 (-) False LOC120543742
TU20310 other upstream 27541 7129626 ~ 7136104 (-) True rpl35a
TU20443 other upstream 105650 7207735 ~ 7208291 (-) False LOC120544114

Expression Profile