RNA id: TU20362


Basic Information

Item Value
RNA id TU20362
length 1919
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G15144
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7309629 ~ 7329219 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTAGTTgtaattttatttgtttaaaattatACCAAGAATCCAAAATAATTAATGGATTCCCCaacgttttatttttaagtttctgacgttttattttgaagtttctGATGTGTTGCGTTCAAGTCAGTGAAAAAACTCAAATTagtcaaattaaaatatttatttaaagcaaTAAAACTTAACTCTTCATACACATGTGTTCAGATCTTTTATACAGTtttcagcaaaacaaaaataaaataaaacaaagtgaaaaaaaaaaaaaaaatgtaaaacttaaAAACCGTGAGTTTGTTTTTCCTCCAGAAAAAACGGTGGAATGTCCTTTAAAAACCCCGTCACCACCGCCGTCACATGACCCTGTCGGTCACATGACCCCGTCACCACCGCAGAGAAAGAAGCacacgaagaagaagaagaagaagaagaagaagaagaagaaagcagTGGAGATGTGGCCTGAGCCTGTCTGTCTAAATGAAGGTGATTTAAACGTCTGATGCTGCGTCTGCTGGCAGCCTGAGACACTAACGATCCCAAACTCTACACAGGTGATGCTGCGTTCAggtgacacacaaacaaacggaaacttcagaGCGATTAGATATTTAGAACCAGGGCTCGTCTCTTTCACATCTAGTACTAgtactagggatgcactgaatccaggattgggcttctgattcggctgaatattgaGCTTCTTGACAGGGTTctggtttctgctgaaccttagaattttgttcccagggaaccgaaccctacgcttgcactcggcgcgctacgctggtcgccgtagtgacggcgccgttgattacgggaaggtgtttacgtaggtggagcgttcaatgcagcaggctgtgaggaagtggacatggatctggtgagcagaacaagtggacatggatctggtgagcagaacaagtggacatggatctggtgagcagaaaaagtggacatggatctggtgagcagaacaagttgttgtttggcagaactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctgttcaatgctgattggtctggtggtggcgaggaccctaaactatacacaacatggccgctgttacaacatctggtctgaaacatctgaaagaagacgagttgtgcacgaaggaatctccagacagcagccagaatgcagcaacttcaggtacagcaaaggaaggacagtccctgtttacttcattcatgagtttactgggttcatggactgaggatgggaggaggagtcagcaccatctcaaccagggggttcAGGATTCAGACGaaaaccagtccctccagaaaaacgcgatcgcataattcaacgcataatcagccaaagtcggcatattcatgcgggggccacatttttttcgccgcataaattgccgatttccgcgtaaaatatgcggtgcttgcatgaattcataatccccgcatttgcGTTGCAAAAGAAGTCACATATTTCTTAATATTtcttagcagaaagttgaaaaaatgttgcgtttacttaacACGAGAGCGGcagttttcccctgttgccatgggaacgttatgaagtgatgtaattacgccACGTGAACACATGGATCAGAGTGATAAGGCTCtgcgtgaacatcatcgaaagtCAGCGTgctggaggttgaatttgacgtTTACTCTGAGTCTCTTAAGCTGGTATCCaatcagaaagctatcttaatatctgatattatctgtctaagtgctcctgctgtctatattattaatgatttttgaaagtctgtctcttttgtatcttttatttctctctgtttagactattacttttatttttactttaatattatattatttgtatatatttttgtatcgtatttgtttacttattgcaatgactgaatatctgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636459.1 lncRNA upstream 31333 7277923 ~ 7278296 (+) True LOC120544121
TU20342 lncRNA upstream 129577 7167378 ~ 7180052 (+) True G15127
TU20338 lncRNA upstream 151981 7157290 ~ 7157648 (+) True G15124
TU20337 lncRNA upstream 166016 7142772 ~ 7143613 (+) True G15123
TU20336 lncRNA upstream 167462 7141875 ~ 7142167 (+) True G15122
TU20388 lncRNA downstream 25779 7354998 ~ 7356557 (+) True G15162
XR_005636456.1 lncRNA downstream 53419 7382638 ~ 7388682 (+) True LOC120544109
TU20399 lncRNA downstream 62194 7391413 ~ 7392310 (+) True G15171
TU20400 lncRNA downstream 62194 7391413 ~ 7392310 (+) False G15171
TU20404 lncRNA downstream 71546 7400765 ~ 7402776 (+) True G15174
XM_039777245.1 mRNA upstream 368195 6935046 ~ 6941434 (+) True or55e1
XM_039776759.1 mRNA upstream 380044 6913684 ~ 6929585 (+) True LOC120543617
XM_039780036.1 mRNA upstream 398139 6910543 ~ 6911490 (+) True LOC120545568
XM_039779950.1 mRNA upstream 410047 6898638 ~ 6899582 (+) True LOC120545541
XM_039779942.1 mRNA upstream 415132 6893550 ~ 6894497 (+) True LOC120545533
XM_039780137.1 mRNA downstream 36577 7365796 ~ 7396634 (+) True LOC120545619
XM_039777404.1 mRNA downstream 101724 7430943 ~ 7440995 (+) False LOC120543955
XM_039777395.1 mRNA downstream 101784 7431003 ~ 7440997 (+) True LOC120543955
XM_039776913.1 mRNA downstream 205880 7535099 ~ 7570718 (+) True ece2b
XM_039776922.1 mRNA downstream 221546 7550765 ~ 7570718 (+) False ece2b
TU20165 other upstream 320233 6972845 ~ 6989396 (+) True G15019
TU19929 other upstream 893559 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 894085 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 894085 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 896254 6408043 ~ 6413375 (+) False spcs2
TU20402 other downstream 68882 7398101 ~ 7399141 (+) True G15173
unassigned_transcript_83 other downstream 82611 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 162146 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 497391 7826610 ~ 7827290 (+) False LOC120543808
TU20559 other downstream 504104 7833323 ~ 7843657 (+) False rffl

Expression Profile